38 items (Entamoeba histolytica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	3.t00068	TBC/Rab GTPase activating domain containing protein. (464 aa)
	EhRab7A	Small GTPase Rab7A. (206 aa)
	EhRab11B	Small GTPase Rab11B. (211 aa)
	EhRAB7B	Rab family GTPase. (207 aa)
	EhRAB7D	Rab family GTPase. (204 aa)
	EhRAB7E	Rab family GTPase. (207 aa)
	EhRAB7F	Rab family GTPase. (201 aa)
	EhRAB7H	Small GTPase Rab7, putative. (197 aa)
	EhRAB11A	Rab family GTPase. (207 aa)
	EhRab7I	Small GTP binding protein Rab7, putative. (204 aa)
	EhRab11D	Small GTPase EhRab11D. (213 aa)
	EhRabX2	Small GTPase EhRabX2. (204 aa)
	479.t00007	Uncharacterized protein. (601 aa)
	258.t00007	Autophagy-related protein. (134 aa)
	31.t00032	TBC/Rab GTPase activating domain containing protein. (653 aa)
	211.t00006	TBC domain containing protein. (305 aa)
	143.t00003	Protein kinase domain containing protein. (561 aa)
	122.t00028	Rab family GTPase. (197 aa)
	217.t00014	TBC domain containing protein. (434 aa)
	135.t00005	Rab GTPase activating protein, putative. (339 aa)
	97.t00017	Protein kinase domain containing protein. (600 aa)
	147.t00014	TBC/Rab GTPase activating domain containing protein. (547 aa)
	341.t00006	TBC domain containing protein. (639 aa)
	109.t00013	TBC domain containing protein. (324 aa)
	285.t00006	Rab family GTPase. (212 aa)
	144.t00002	TBC domain containing protein. (338 aa)
	274.t00012	TBC domain containing protein. (289 aa)
	7.t00021	Uncharacterized protein. (450 aa)
	42.t00025	TBC/Rab GTPase activating domain containing protein. (604 aa)
	249.t00012	TBC domain containing protein. (313 aa)
	349.t00001	Rab GTPase activating protein, putative. (504 aa)
	337.t00002	Autophagy-related protein. (129 aa)
	12.t00004	Rab GTPase activating protein, putative. (447 aa)
	66.t00016	Protein kinase domain containing protein. (518 aa)
	5.t00074	TBC domain containing protein. (476 aa)
	24.t00043	TBC domain containing protein. (455 aa)
	EHI_182050	Uncharacterized protein. (357 aa)
	EHI_162340	Serine/threonine kinase 3, putative. (607 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
122.t00028	135.t00005	C4M717	C4M687	Rab family GTPase.	Rab GTPase activating protein, putative.	0.467
122.t00028	147.t00014	C4M717	C4M5D1	Rab family GTPase.	TBC/Rab GTPase activating domain containing protein.	0.456
122.t00028	274.t00012	C4M717	C4M103	Rab family GTPase.	TBC domain containing protein.	0.499
122.t00028	3.t00068	C4M717	C4LTD4	Rab family GTPase.	TBC/Rab GTPase activating domain containing protein.	0.456
122.t00028	31.t00032	C4M717	C4M857	Rab family GTPase.	TBC/Rab GTPase activating domain containing protein.	0.458
122.t00028	341.t00006	C4M717	C4M4Z5	Rab family GTPase.	TBC domain containing protein.	0.453
122.t00028	349.t00001	C4M717	C4LYK1	Rab family GTPase.	Rab GTPase activating protein, putative.	0.453
122.t00028	42.t00025	C4M717	C4LZI0	Rab family GTPase.	TBC/Rab GTPase activating domain containing protein.	0.454
122.t00028	5.t00074	C4M717	C4LUA4	Rab family GTPase.	TBC domain containing protein.	0.453
122.t00028	7.t00021	C4M717	C4LZP7	Rab family GTPase.	Uncharacterized protein.	0.493
135.t00005	122.t00028	C4M687	C4M717	Rab GTPase activating protein, putative.	Rab family GTPase.	0.467
135.t00005	258.t00007	C4M687	C4MAE2	Rab GTPase activating protein, putative.	Autophagy-related protein.	0.575
135.t00005	337.t00002	C4M687	C4LXE4	Rab GTPase activating protein, putative.	Autophagy-related protein.	0.580
135.t00005	EhRAB7B	C4M687	Q6AW67	Rab GTPase activating protein, putative.	Rab family GTPase.	0.458
135.t00005	EhRAB7D	C4M687	Q6AW65	Rab GTPase activating protein, putative.	Rab family GTPase.	0.453
135.t00005	EhRAB7E	C4M687	Q6AW64	Rab GTPase activating protein, putative.	Rab family GTPase.	0.474
135.t00005	EhRAB7F	C4M687	Q6AW63	Rab GTPase activating protein, putative.	Rab family GTPase.	0.458
135.t00005	EhRAB7H	C4M687	Q6AW61	Rab GTPase activating protein, putative.	Small GTPase Rab7, putative.	0.453
135.t00005	EhRab7A	C4M687	Q9BLE8	Rab GTPase activating protein, putative.	Small GTPase Rab7A.	0.453
135.t00005	EhRab7I	C4M687	Q5NT44	Rab GTPase activating protein, putative.	Small GTP binding protein Rab7, putative.	0.458