116 items (Entamoeba histolytica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	24.t00043	TBC domain containing protein. (455 aa)
	EHI_018490	Uncharacterized protein. (866 aa)
	EHI_182050	Uncharacterized protein. (357 aa)
	EHI_162340	Serine/threonine kinase 3, putative. (607 aa)
	EHI_065230	UDENN domain-containing protein. (994 aa)
	EHI_167060	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (439 aa)
	EHI_014210	Uncharacterized protein. (201 aa)
	63.t00019	Myotubularin-related protein 2, putative. (920 aa)
	EhRabX23	Small GTPase EhRabX23. (186 aa)
	11.t00019	PH-protein kinase domain containing protein; Belongs to the protein kinase superfamily. (433 aa)
	EhRabX19	Small GTPase EhRabX19. (206 aa)
	EhRabX14	Small GTPase EhRabX14. (353 aa)
	EhRabX8	Small GTPase EhRabX8. (209 aa)
	EhRabX6	Small GTPase EhRabX6. (200 aa)
	EhRabX4	Small GTPase EhRabX4. (194 aa)
	EhRabX2	Small GTPase EhRabX2. (204 aa)
	EhRabC7	Small GTPase EhRabC7. (195 aa)
	EhRab11D	Small GTPase EhRab11D. (213 aa)
	EhRab7I	Small GTP binding protein Rab7, putative. (204 aa)
	EhRAB11A	Rab family GTPase. (207 aa)
	EhRAB7H	Small GTPase Rab7, putative. (197 aa)
	EhRAB7G	Rab family GTPase. (190 aa)
	EhRAB7F	Rab family GTPase. (201 aa)
	EhRAB7E	Rab family GTPase. (207 aa)
	EhRAB7D	Rab family GTPase. (204 aa)
	EhRAB7B	Rab family GTPase. (207 aa)
	35.t00048	PH-protein kinase domain containing protein; Belongs to the protein kinase superfamily. (466 aa)
	rab8	Small GTP-binding protein Rab8. (199 aa)
	EhRabI1	Small GTPase RabI1. (201 aa)
	EhRab11B	Small GTPase Rab11B. (211 aa)
	EhRabH	Rab family GTPase. (208 aa)
	EhRab7A	Small GTPase Rab7A. (206 aa)
	EhRab21	Small GTPase Rab21. (203 aa)
	EhRab1A	Small GTPase Rab1A. (205 aa)
	EhRabX29	GTP-binding protein EhRabX29, putative. (193 aa)
	EhRabX35	Small GTPase EhRabX35. (194 aa)
	EhRabX36	GTP-binding protein EhRabX36, putative. (202 aa)
	35.t00005	Myotubularin-related protein 2, putative. (668 aa)
	479.t00007	Uncharacterized protein. (601 aa)
	383.t00005	Myotubularin, putative. (768 aa)
	258.t00007	Autophagy-related protein. (134 aa)
	7.t00011	Trafficking protein particle complex subunit; May play a role in vesicular transport from endoplasmic reticulum to Golgi. (191 aa)
	304.t00006	PH-protein kinase domain containing protein; Belongs to the protein kinase superfamily. (439 aa)
	298.t00009	Uncharacterized protein. (449 aa)
	197.t00006	PH-protein kinase domain containing protein. (377 aa)
	197.t00003	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (140 aa)
	31.t00032	TBC/Rab GTPase activating domain containing protein. (653 aa)
	227.t00003	Uncharacterized protein. (180 aa)
	183.t00023	Rab family GTPase. (202 aa)
	211.t00006	TBC domain containing protein. (305 aa)
	143.t00003	Protein kinase domain containing protein. (561 aa)
	122.t00028	Rab family GTPase. (197 aa)
	29.t00036	Uncharacterized protein. (672 aa)
	217.t00014	TBC domain containing protein. (434 aa)
	145.t00009	Vacuolar sorting protein 9 (VPS9) domain, putative. (768 aa)
	135.t00005	Rab GTPase activating protein, putative. (339 aa)
	97.t00017	Protein kinase domain containing protein. (600 aa)
	59.t00012	Sedlin, putative. (137 aa)
	147.t00014	TBC/Rab GTPase activating domain containing protein. (547 aa)
	7.t00074	Uncharacterized protein. (888 aa)
	341.t00006	TBC domain containing protein. (639 aa)
	675.t00001	Uncharacterized protein. (397 aa)
	6.t00081	Uncharacterized protein. (460 aa)
	3.t00068	TBC/Rab GTPase activating domain containing protein. (464 aa)
	EhRabX30	Small GTPase EhRabX30. (182 aa)
	5.t00074	TBC domain containing protein. (476 aa)
	58.t00014	Sand family protein. (406 aa)
	21.t00033	Uncharacterized protein. (420 aa)
	4.t00039	Myotubularin, putative. (559 aa)
	25.t00016	Uncharacterized protein. (503 aa)
	15.t00056	UDENN domain-containing protein. (368 aa)
	343.t00010	Uncharacterized protein. (556 aa)
	105.t00009	UDENN domain-containing protein. (955 aa)
	66.t00014	Sand family protein. (442 aa)
	66.t00016	Protein kinase domain containing protein. (518 aa)
	405.t00005	Uncharacterized protein. (484 aa)
	12.t00004	Rab GTPase activating protein, putative. (447 aa)
	12.t00030	Uncharacterized protein. (1014 aa)
	11.t00002	PH-protein kinase domain containing protein; Belongs to the protein kinase superfamily. (441 aa)
	221.t00016	Uncharacterized protein. (214 aa)
	23.t00003	Uncharacterized protein. (531 aa)
	24.t00015	Uncharacterized protein. (438 aa)
	32.t00033	Uncharacterized protein. (588 aa)
	159.t00009	Trafficking protein particle complex subunit; Belongs to the TRAPP small subunits family. (143 aa)
	123.t00017	Vacuolar sorting protein VPS9, putative. (777 aa)
	337.t00002	Autophagy-related protein. (129 aa)
	37.t00033	Rab family GTPase. (196 aa)
	37.t00030	Uncharacterized protein. (364 aa)
	169.t00012	Uncharacterized protein. (642 aa)
	55.t00019	Ankyrin repeat protein, putative. (620 aa)
	349.t00004	Rab family GTPase. (180 aa)
	349.t00001	Rab GTPase activating protein, putative. (504 aa)
	43.t00023	Uncharacterized protein. (483 aa)
	249.t00012	TBC domain containing protein. (313 aa)
	249.t00011	Protein with DENN and LIM domains. (533 aa)
	95.t00008	Sand family protein. (449 aa)
	47.t00028	DENN domain protein. (931 aa)
	42.t00025	TBC/Rab GTPase activating domain containing protein. (604 aa)
	86.t00011	DENN domain protein. (991 aa)
	7.t00021	Uncharacterized protein. (450 aa)
	189.t00005	Myotubularin, putative. (601 aa)
	36.t00007	Uncharacterized protein. (711 aa)
	153.t00003	Uncharacterized protein. (665 aa)
	274.t00012	TBC domain containing protein. (289 aa)
	34.t00007	Rab GDP dissociation inhibitor; Belongs to the Rab GDI family. (439 aa)
	34.t00006	Rab family GTPase. (264 aa)
	36.t00016	Rab family GTPase. (196 aa)
	144.t00002	TBC domain containing protein. (338 aa)
	285.t00006	Rab family GTPase. (212 aa)
	9.t00044	PH-protein kinase domain containing protein; Belongs to the protein kinase superfamily. (433 aa)
	79.t00016	Rab GDP dissociation inhibitor, putative. (480 aa)
	4.t00093	Protein kinase, putative; Belongs to the protein kinase superfamily. (434 aa)
	63.t00001	Uncharacterized protein. (172 aa)
	109.t00013	TBC domain containing protein. (324 aa)
	70.t00018	Vacuolar sorting protein 9 (VPS9) domain, putative. (607 aa)
	2.t00073	Uncharacterized protein. (253 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
105.t00009	EhRabX14	C4LV90	Q5NT02	UDENN domain-containing protein.	Small GTPase EhRabX14.	0.494
105.t00009	EhRabX8	C4LV90	Q5NT08	UDENN domain-containing protein.	Small GTPase EhRabX8.	0.494
105.t00009	rab8	C4LV90	Q963D1	UDENN domain-containing protein.	Small GTP-binding protein Rab8.	0.494
11.t00002	123.t00017	C4LVW8	C4LX16	PH-protein kinase domain containing protein; Belongs to the protein kinase superfamily.	Vacuolar sorting protein VPS9, putative.	0.420
11.t00019	123.t00017	C4M4G9	C4LX16	PH-protein kinase domain containing protein; Belongs to the protein kinase superfamily.	Vacuolar sorting protein VPS9, putative.	0.419
12.t00030	189.t00005	C4LVT0	C4M0I2	Uncharacterized protein.	Myotubularin, putative.	0.524
12.t00030	35.t00005	C4LVT0	C4MBL4	Uncharacterized protein.	Myotubularin-related protein 2, putative.	0.516
12.t00030	383.t00005	C4LVT0	C4MAR2	Uncharacterized protein.	Myotubularin, putative.	0.523
12.t00030	4.t00039	C4LVT0	C4LUH7	Uncharacterized protein.	Myotubularin, putative.	0.522
12.t00030	63.t00019	C4LVT0	C4M4M0	Uncharacterized protein.	Myotubularin-related protein 2, putative.	0.531
12.t00030	EHI_014210	C4LVT0	B1N2X7	Uncharacterized protein.	Uncharacterized protein.	0.504
12.t00030	EhRab21	C4LVT0	Q9BLF0	Uncharacterized protein.	Small GTPase Rab21.	0.504
12.t00030	EhRabX6	C4LVT0	Q5NT10	Uncharacterized protein.	Small GTPase EhRabX6.	0.511
122.t00028	123.t00017	C4M717	C4LX16	Rab family GTPase.	Vacuolar sorting protein VPS9, putative.	0.465
122.t00028	135.t00005	C4M717	C4M687	Rab family GTPase.	Rab GTPase activating protein, putative.	0.467
122.t00028	147.t00014	C4M717	C4M5D1	Rab family GTPase.	TBC/Rab GTPase activating domain containing protein.	0.456
122.t00028	183.t00023	C4M717	C4M7S5	Rab family GTPase.	Rab family GTPase.	0.441
122.t00028	21.t00033	C4M717	C4LUE7	Rab family GTPase.	Uncharacterized protein.	0.552
122.t00028	23.t00003	C4M717	C4LWC3	Rab family GTPase.	Uncharacterized protein.	0.688
122.t00028	274.t00012	C4M717	C4M103	Rab family GTPase.	TBC domain containing protein.	0.499