7 items (Entamoeba histolytica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	258.t00007	Autophagy-related protein. (134 aa)
	186.t00020	60S ribosomal protein L40, putative. (56 aa)
	135.t00003	N_BRCA1_IG domain-containing protein. (263 aa)
	337.t00002	Autophagy-related protein. (129 aa)
	158.t00013	40S ribosomal protein S27a, putative. (139 aa)
	199.t00007	Uncharacterized protein; Belongs to the PI3/PI4-kinase family. (2457 aa)
	15.t00018	Uncharacterized protein. (522 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
135.t00003	15.t00018	C4M685	C4LUW6	N_BRCA1_IG domain-containing protein.	Uncharacterized protein.	0.856
135.t00003	158.t00013	C4M685	C4M8F6	N_BRCA1_IG domain-containing protein.	40S ribosomal protein S27a, putative.	0.830
135.t00003	186.t00020	C4M685	C4LV09	N_BRCA1_IG domain-containing protein.	60S ribosomal protein L40, putative.	0.597
135.t00003	199.t00007	C4M685	C4M3H1	N_BRCA1_IG domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.585
135.t00003	258.t00007	C4M685	C4MAE2	N_BRCA1_IG domain-containing protein.	Autophagy-related protein.	0.885
135.t00003	337.t00002	C4M685	C4LXE4	N_BRCA1_IG domain-containing protein.	Autophagy-related protein.	0.888
15.t00018	135.t00003	C4LUW6	C4M685	Uncharacterized protein.	N_BRCA1_IG domain-containing protein.	0.856
15.t00018	158.t00013	C4LUW6	C4M8F6	Uncharacterized protein.	40S ribosomal protein S27a, putative.	0.720
15.t00018	186.t00020	C4LUW6	C4LV09	Uncharacterized protein.	60S ribosomal protein L40, putative.	0.560
15.t00018	199.t00007	C4LUW6	C4M3H1	Uncharacterized protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.992
15.t00018	258.t00007	C4LUW6	C4MAE2	Uncharacterized protein.	Autophagy-related protein.	0.673
15.t00018	337.t00002	C4LUW6	C4LXE4	Uncharacterized protein.	Autophagy-related protein.	0.676
158.t00013	135.t00003	C4M8F6	C4M685	40S ribosomal protein S27a, putative.	N_BRCA1_IG domain-containing protein.	0.830
158.t00013	15.t00018	C4M8F6	C4LUW6	40S ribosomal protein S27a, putative.	Uncharacterized protein.	0.720
158.t00013	186.t00020	C4M8F6	C4LV09	40S ribosomal protein S27a, putative.	60S ribosomal protein L40, putative.	0.998
158.t00013	199.t00007	C4M8F6	C4M3H1	40S ribosomal protein S27a, putative.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.625
158.t00013	258.t00007	C4M8F6	C4MAE2	40S ribosomal protein S27a, putative.	Autophagy-related protein.	0.671
158.t00013	337.t00002	C4M8F6	C4LXE4	40S ribosomal protein S27a, putative.	Autophagy-related protein.	0.671
186.t00020	135.t00003	C4LV09	C4M685	60S ribosomal protein L40, putative.	N_BRCA1_IG domain-containing protein.	0.597
186.t00020	15.t00018	C4LV09	C4LUW6	60S ribosomal protein L40, putative.	Uncharacterized protein.	0.560