(22 nodes) Hsp70 protein network (Entamoeba histolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	EHI_100810	Heat shock protein 70, mitochondrial, putative. (174 aa)
	EHI_091570	Heat shock protein 70, putative. (387 aa)
	EHI_086390	Heat shock protein 70 family. (474 aa)
	EHI_131920	Uncharacterized protein; Belongs to the heat shock protein 70 family. (601 aa)
	EHI_108130	Heat shock protein70, hsp70A2, putative. (113 aa)
	EHI_175600	Heat shock protein 70, mitochondrial, putative. (199 aa)
	127.t00007	Heat shock protein 70, putative. (769 aa)
	117.t00018	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family. (672 aa)
	EHI_070450	Heat shock protein70, mitochondrial, putative. (226 aa)
	EHI_034960	Heat shock protein70, hsp70A2, putative. (295 aa)
	EHI_132530	Heat shock protein70, hsp70A2, putative. (141 aa)
	384.t00005	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family. (672 aa)
	64.t00003	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family. (669 aa)
	450.t00003	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family. (558 aa)
	66.t00029	Heat shock protein, putative. (629 aa)
	197.t00013	Heat shock protein 70, putative. (757 aa)
	EHI_112590	Heat shock protein 70 family. (325 aa)
	8.t00007	Chaperone protein dnaK, putative; Belongs to the heat shock protein 70 family. (660 aa)
	23.t00058	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family. (697 aa)
	EHI_035730	Uncharacterized protein. (679 aa)
	EHI_015390	Heat shock protein70, hsp70A2, putative. (220 aa)
	EHI_180380	Heat shock protein 70, putative. (496 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
117.t00018	127.t00007	C4LW03	C4LT65	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Heat shock protein 70, putative.	0.650
117.t00018	197.t00013	C4LW03	C4M8K8	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Heat shock protein 70, putative.	0.519
117.t00018	23.t00058	C4LW03	C4LW90	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.531
117.t00018	450.t00003	C4LW03	C4MAT4	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.531
117.t00018	66.t00029	C4LW03	C4M965	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Heat shock protein, putative.	0.519
117.t00018	8.t00007	C4LW03	C4M7P0	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Chaperone protein dnaK, putative; Belongs to the heat shock protein 70 family.	0.414
117.t00018	EHI_070450	C4LW03	B1N3V8	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Heat shock protein70, mitochondrial, putative.	0.414
117.t00018	EHI_100810	C4LW03	B1N4K9	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Heat shock protein 70, mitochondrial, putative.	0.414
117.t00018	EHI_175600	C4LW03	B1N5T4	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	Heat shock protein 70, mitochondrial, putative.	0.414
127.t00007	117.t00018	C4LT65	C4LW03	Heat shock protein 70, putative.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.650
127.t00007	23.t00058	C4LT65	C4LW90	Heat shock protein 70, putative.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.991
127.t00007	384.t00005	C4LT65	C4LX18	Heat shock protein 70, putative.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.650
127.t00007	450.t00003	C4LT65	C4MAT4	Heat shock protein 70, putative.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.982
127.t00007	64.t00003	C4LT65	C4LZD0	Heat shock protein 70, putative.	Heat shock protein 70, putative; Belongs to the heat shock protein 70 family.	0.650
127.t00007	8.t00007	C4LT65	C4M7P0	Heat shock protein 70, putative.	Chaperone protein dnaK, putative; Belongs to the heat shock protein 70 family.	0.729
127.t00007	EHI_015390	C4LT65	B1N398	Heat shock protein 70, putative.	Heat shock protein70, hsp70A2, putative.	0.689
127.t00007	EHI_034960	C4LT65	B1N5J5	Heat shock protein 70, putative.	Heat shock protein70, hsp70A2, putative.	0.715
127.t00007	EHI_070450	C4LT65	B1N3V8	Heat shock protein 70, putative.	Heat shock protein70, mitochondrial, putative.	0.729
127.t00007	EHI_086390	C4LT65	B1N4C3	Heat shock protein 70, putative.	Heat shock protein 70 family.	0.898
127.t00007	EHI_091570	C4LT65	B1N4F7	Heat shock protein 70, putative.	Heat shock protein 70, putative.	0.650