(13 nodes) Ubiquitin homologues network (Entamoeba histolytica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	2.t00115	Uncharacterized protein. (185 aa)
	253.t00003	Uncharacterized protein. (257 aa)
	294.t00005	RAD23 protein, putative. (314 aa)
	404.t00007	Ubiquitin-like protein 5, putative. (79 aa)
	59.t00025	Uncharacterized protein. (256 aa)
	EhUBI1	Ubiquitin, putative. (77 aa)
	448.t00004	UV excision repair protein RAD23, putative. (360 aa)
	19.t00039	Ubiquitin-like protein. (114 aa)
	153.t00004	Uncharacterized protein. (287 aa)
	64.t00032	Ubiquitin, putative. (97 aa)
	14.t00031	Uncharacterized protein. (308 aa)
	300.t00010	Ubiquitin-like, putative. (77 aa)
	81.t00019	Ubiquitin-like protein. (327 aa)

Your Current Organism:

Entamoeba histolytica

NCBI taxonomy Id: 5759
Other names: E. histolytica

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
14.t00031	19.t00039	C4LX78	C4M1C8	Uncharacterized protein.	Ubiquitin-like protein.	0.866
14.t00031	2.t00115	C4LX78	C4LSK3	Uncharacterized protein.	Uncharacterized protein.	0.866
14.t00031	294.t00005	C4LX78	C4MAR5	Uncharacterized protein.	RAD23 protein, putative.	0.978
14.t00031	300.t00010	C4LX78	C4LVJ5	Uncharacterized protein.	Ubiquitin-like, putative.	0.817
14.t00031	404.t00007	C4LX78	C4MA24	Uncharacterized protein.	Ubiquitin-like protein 5, putative.	0.455
14.t00031	448.t00004	C4LX78	C4M385	Uncharacterized protein.	UV excision repair protein RAD23, putative.	0.977
14.t00031	64.t00032	C4LX78	C4LY85	Uncharacterized protein.	Ubiquitin, putative.	0.941
14.t00031	81.t00019	C4LX78	C4LUL1	Uncharacterized protein.	Ubiquitin-like protein.	0.937
14.t00031	EhUBI1	C4LX78	C4M760	Uncharacterized protein.	Ubiquitin, putative.	0.941
19.t00039	14.t00031	C4M1C8	C4LX78	Ubiquitin-like protein.	Uncharacterized protein.	0.866
19.t00039	294.t00005	C4M1C8	C4MAR5	Ubiquitin-like protein.	RAD23 protein, putative.	0.805
19.t00039	300.t00010	C4M1C8	C4LVJ5	Ubiquitin-like protein.	Ubiquitin-like, putative.	0.979
19.t00039	404.t00007	C4M1C8	C4MA24	Ubiquitin-like protein.	Ubiquitin-like protein 5, putative.	0.463
19.t00039	448.t00004	C4M1C8	C4M385	Ubiquitin-like protein.	UV excision repair protein RAD23, putative.	0.803
19.t00039	64.t00032	C4M1C8	C4LY85	Ubiquitin-like protein.	Ubiquitin, putative.	0.713
19.t00039	81.t00019	C4M1C8	C4LUL1	Ubiquitin-like protein.	Ubiquitin-like protein.	0.753
19.t00039	EhUBI1	C4M1C8	C4M760	Ubiquitin-like protein.	Ubiquitin, putative.	0.706
2.t00115	14.t00031	C4LSK3	C4LX78	Uncharacterized protein.	Uncharacterized protein.	0.866
2.t00115	294.t00005	C4LSK3	C4MAR5	Uncharacterized protein.	RAD23 protein, putative.	0.804
2.t00115	300.t00010	C4LSK3	C4LVJ5	Uncharacterized protein.	Ubiquitin-like, putative.	0.951