5 items (Thermothielavioides terrestris) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	THITE_2113192	YTH domain-containing protein. (576 aa)
	THITE_2115187	Uncharacterized protein. (839 aa)
	THITE_2047808	Uncharacterized protein. (1221 aa)
	THITE_2130685	RRM domain-containing protein. (661 aa)
	THITE_2119239	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (652 aa)

Your Current Organism:

Thermothielavioides terrestris

NCBI taxonomy Id: 578455
Other names: T. terrestris NRRL 8126, Thermothielavioides terrestris NRRL 8126

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THITE_2047808	THITE_2113192	G2R4Z0	G2R1Z8	Uncharacterized protein.	YTH domain-containing protein.	0.997
THITE_2113192	THITE_2047808	G2R1Z8	G2R4Z0	YTH domain-containing protein.	Uncharacterized protein.	0.997
THITE_2113192	THITE_2115187	G2R1Z8	G2R3H4	YTH domain-containing protein.	Uncharacterized protein.	0.506
THITE_2113192	THITE_2119239	G2R1Z8	G2RBI1	YTH domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.997
THITE_2113192	THITE_2130685	G2R1Z8	G2RB30	YTH domain-containing protein.	RRM domain-containing protein.	0.501
THITE_2115187	THITE_2113192	G2R3H4	G2R1Z8	Uncharacterized protein.	YTH domain-containing protein.	0.506
THITE_2119239	THITE_2113192	G2RBI1	G2R1Z8	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	YTH domain-containing protein.	0.997
THITE_2130685	THITE_2113192	G2RB30	G2R1Z8	RRM domain-containing protein.	YTH domain-containing protein.	0.501