13 items (Rhodotorula graminis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0A0N8Q025	Adenosylhomocysteinase. (430 aa)
	A0A0P9EL42	Uncharacterized protein. (770 aa)
	A0A0P9EX18	Meth_synt_2 domain-containing protein. (396 aa)
	A0A0P9EZ45	Uncharacterized protein. (510 aa)
	A0A0P9F816	Uncharacterized protein. (548 aa)
	A0A0P9GG50	PALP domain-containing protein. (387 aa)
	A0A0P9GKK9	Meth_synt_2 domain-containing protein. (402 aa)
	A0A0P9ITY8	Uncharacterized protein. (386 aa)
	A0A194S411	Uncharacterized protein. (741 aa)
	A0A194S446	Uncharacterized protein. (524 aa)
	A0A194S4S3	GHMP_kinases_N domain-containing protein. (883 aa)
	A0A194S9T5	PALP domain-containing protein. (382 aa)
	A0A194SFS5	Uncharacterized protein. (437 aa)

Your Current Organism:

Rhodotorula graminis

NCBI taxonomy Id: 578459
Other names: R. graminis WP1, Rhodotorula graminis WP1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A0N8Q025	A0A0P9EL42	Adenosylhomocysteinase.	Uncharacterized protein.	0.979
A0A0N8Q025	A0A0P9EX18	Adenosylhomocysteinase.	Meth_synt_2 domain-containing protein.	0.900
A0A0N8Q025	A0A0P9EZ45	Adenosylhomocysteinase.	Uncharacterized protein.	0.914
A0A0N8Q025	A0A0P9F816	Adenosylhomocysteinase.	Uncharacterized protein.	0.822
A0A0N8Q025	A0A0P9GG50	Adenosylhomocysteinase.	PALP domain-containing protein.	0.913
A0A0N8Q025	A0A0P9GKK9	Adenosylhomocysteinase.	Meth_synt_2 domain-containing protein.	0.920
A0A0N8Q025	A0A0P9ITY8	Adenosylhomocysteinase.	Uncharacterized protein.	0.866
A0A0N8Q025	A0A194S411	Adenosylhomocysteinase.	Uncharacterized protein.	0.931
A0A0N8Q025	A0A194S446	Adenosylhomocysteinase.	Uncharacterized protein.	0.754
A0A0N8Q025	A0A194S4S3	Adenosylhomocysteinase.	GHMP_kinases_N domain-containing protein.	0.721
A0A0N8Q025	A0A194S9T5	Adenosylhomocysteinase.	PALP domain-containing protein.	0.946
A0A0N8Q025	A0A194SFS5	Adenosylhomocysteinase.	Uncharacterized protein.	0.689
A0A0P9EL42	A0A0N8Q025	Uncharacterized protein.	Adenosylhomocysteinase.	0.979
A0A0P9EL42	A0A0P9EZ45	Uncharacterized protein.	Uncharacterized protein.	0.957
A0A0P9EL42	A0A0P9F816	Uncharacterized protein.	Uncharacterized protein.	0.770
A0A0P9EL42	A0A0P9GG50	Uncharacterized protein.	PALP domain-containing protein.	0.907
A0A0P9EL42	A0A0P9ITY8	Uncharacterized protein.	Uncharacterized protein.	0.908
A0A0P9EL42	A0A194S411	Uncharacterized protein.	Uncharacterized protein.	0.959
A0A0P9EL42	A0A194S446	Uncharacterized protein.	Uncharacterized protein.	0.650
A0A0P9EL42	A0A194S4S3	Uncharacterized protein.	GHMP_kinases_N domain-containing protein.	0.802