(98 nodes) GTP hydrolysis and joining of the 60S ribosomal subunit network (Nosema bombycis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	RL15	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	NBO_1210g0002	40S ribosomal protein S7. (163 aa)
	NBO_1208gi001	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (240 aa)
	RSSA	40S ribosomal protein SA; Belongs to the universal ribosomal protein uS2 family. (260 aa)
	RS16	40S ribosomal protein S16. (146 aa)
	RS9	40S ribosomal protein S9. (187 aa)
	RS5	40S ribosomal protein S5. (205 aa)
	R23A2	60S ribosomal protein L23a 2. (151 aa)
	RL5B-2	60S ribosomal protein L5-B. (284 aa)
	NBO_59gi001	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (148 aa)
	RL34-2	60S ribosomal protein L34. (193 aa)
	RS263	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (103 aa)
	RL4A	60S ribosomal protein L4-1. (334 aa)
	RL9B	60S ribosomal protein L9-B. (186 aa)
	IF2P-4	Eukaryotic translation initiation factor 5B. (157 aa)
	NBO_6gi002	60S ribosomal protein L37A. (92 aa)
	RL27A-2	60S ribosomal protein L27a. (147 aa)
	RS2	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family. (197 aa)
	RS14-2	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (111 aa)
	RL8A	60S ribosomal protein L8-A. (203 aa)
	RL21-2	60S ribosomal protein L21. (160 aa)
	RL18	60S ribosomal protein L18. (194 aa)
	RL37A	60S ribosomal protein L37a. (86 aa)
	RL39E	Ribosomal protein L39e. (52 aa)
	RLA0	60S acidic ribosomal protein P0. (139 aa)
	RL4B	60S ribosomal protein L4-2. (192 aa)
	RL13-2	60S ribosomal protein L13. (162 aa)
	R10A1	60S ribosomal protein L10a-1. (217 aa)
	RS8B-2	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (170 aa)
	RL32	60S ribosomal protein L32. (139 aa)
	NBO_1009g0002	40S ribosomal protein S20. (119 aa)
	RL3	60S ribosomal protein L3. (664 aa)
	RS263-2	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (103 aa)
	RS2-2	40S ribosomal protein S2. (116 aa)
	RS3A	40S ribosomal protein S1; Belongs to the eukaryotic ribosomal protein eS1 family. (235 aa)
	RLA0-2	60S acidic ribosomal protein P0. (263 aa)
	RL27	60S ribosomal protein L27. (125 aa)
	RS15	40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family. (148 aa)
	NBO_418g0002	50S ribosomal protein L24P. (139 aa)
	RL10A-2	60S ribosomal protein L10A. (123 aa)
	RL12-2	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (164 aa)
	RL44	60S ribosomal protein L44. (103 aa)
	RS17	40S ribosomal protein S17. (120 aa)
	RL31	60S ribosomal protein L31. (111 aa)
	RL3-2	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family. (384 aa)
	RS11	40S ribosomal protein S11. (122 aa)
	RS15A	40S ribosomal protein S15a. (127 aa)
	NBO_1365gi002	Translation initiation factor IF-2P. (683 aa)
	IF2P	Eukaryotic translation initiation factor 5B. (374 aa)
	RL8-2	60S ribosomal protein L8. (237 aa)
	RL8A-2	60S ribosomal protein L8-A. (203 aa)
	RS16-2	40S ribosomal protein S16. (146 aa)
	RS13	40S ribosomal protein S13. (1145 aa)
	RS18	40S ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family. (115 aa)
	NBO_1305g0001	60S ribosomal protein L22. (113 aa)
	NBO_1303g0001	60S ribosomal protein L22. (109 aa)
	NBO_1114gi001	Uncharacterized protein. (106 aa)
	NBO_1022gi001	60S ribosomal protein L32. (80 aa)
	RL13A	60S ribosomal protein L13a. (147 aa)
	RL5B	60S ribosomal protein L5-B. (284 aa)
	RL23	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (146 aa)
	NBO_792g0001	Ribosomal protein L36e. (95 aa)
	RL12	60S ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (164 aa)
	RL7	60S ribosomal protein L7. (232 aa)
	RL10	60S ribosomal protein L10. (116 aa)
	NBO_375g0004	Uncharacterized protein. (106 aa)
	NBO_445gi001	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family. (149 aa)
	MCES	mRNA cap guanine-N7 methyltransferase. (389 aa)
	IF2P-2	Eukaryotic translation initiation factor 5B. (218 aa)
	NBO_417g0005	50S ribosomal protein L24P. (139 aa)
	RL18A	60S ribosomal protein L20; Belongs to the eukaryotic ribosomal protein eL20 family. (180 aa)
	RL21	60S ribosomal protein L21. (198 aa)
	RL17	60S ribosomal protein L17; Belongs to the universal ribosomal protein uL22 family. (171 aa)
	IF2P-3	Eukaryotic translation initiation factor 5B. (63 aa)
	RL19	60S ribosomal protein L19. (154 aa)
	RS14	40S ribosomal protein S14; Belongs to the universal ribosomal protein uS11 family. (135 aa)
	RS6	40S ribosomal protein S6; Belongs to the eukaryotic ribosomal protein eS6 family. (218 aa)
	RS3	40S ribosomal protein S3. (214 aa)
	NBO_41g0041	Ribosomal protein S28e. (67 aa)
	NBO_29g0033	40S ribosomal protein S12. (149 aa)
	RL30	60S ribosomal protein L30. (108 aa)
	RL22	60S ribosomal protein L22. (109 aa)
	RL24	60S ribosomal protein L24. (92 aa)
	RL23-2	60S ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (146 aa)
	RS4	40S ribosomal protein S4. (172 aa)
	RL8	60S ribosomal protein L8. (237 aa)
	RL13A-2	60S ribosomal protein L13a. (197 aa)
	NBO_1116g0001	60S ribosomal protein L35. (122 aa)
	RL13	60S ribosomal protein L13. (162 aa)
	RL30-2	60S ribosomal protein L30. (108 aa)
	RL34	60S ribosomal protein L34. (106 aa)
	RL11	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (174 aa)
	RS25	40S ribosomal protein S25. (67 aa)
	RL35A	60S ribosomal protein L35A. (73 aa)
	RS8B	40S ribosomal protein S8; Belongs to the eukaryotic ribosomal protein eS8 family. (170 aa)
	RL27A	60S ribosomal protein L27a. (107 aa)
	RL35A-2	60S ribosomal protein L35a. (113 aa)
	RS24A	40S ribosomal protein S24-A. (131 aa)

Your Current Organism:

Nosema bombycis

NCBI taxonomy Id: 578461
Other names: N. bombycis CQ1, Nosema bombycis CQ1

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
IF2P	MCES	R0KKU6	R0MMQ5	Eukaryotic translation initiation factor 5B.	mRNA cap guanine-N7 methyltransferase.	0.900
IF2P	NBO_1009g0002	R0KKU6	R0MFT9	Eukaryotic translation initiation factor 5B.	40S ribosomal protein S20.	0.914
IF2P	NBO_1022gi001	R0KKU6	R0KLT9	Eukaryotic translation initiation factor 5B.	60S ribosomal protein L32.	0.614
IF2P	NBO_1114gi001	R0KKU6	R0KLL1	Eukaryotic translation initiation factor 5B.	Uncharacterized protein.	0.562
IF2P	NBO_1116g0001	R0KKU6	R0KWZ6	Eukaryotic translation initiation factor 5B.	60S ribosomal protein L35.	0.900
IF2P	NBO_1208gi001	R0KKU6	R0M094	Eukaryotic translation initiation factor 5B.	40S ribosomal protein S2; Belongs to the universal ribosomal protein uS5 family.	0.820
IF2P	NBO_1210g0002	R0KKU6	R0M092	Eukaryotic translation initiation factor 5B.	40S ribosomal protein S7.	0.781
IF2P	NBO_1303g0001	R0KKU6	R0KKZ8	Eukaryotic translation initiation factor 5B.	60S ribosomal protein L22.	0.527
IF2P	NBO_1305g0001	R0KKU6	R0KKZ3	Eukaryotic translation initiation factor 5B.	60S ribosomal protein L22.	0.527
IF2P	NBO_29g0033	R0KKU6	R0KU75	Eukaryotic translation initiation factor 5B.	40S ribosomal protein S12.	0.857
IF2P	NBO_375g0004	R0KKU6	R0KPT7	Eukaryotic translation initiation factor 5B.	Uncharacterized protein.	0.562
IF2P	NBO_417g0005	R0KKU6	R0KQQ6	Eukaryotic translation initiation factor 5B.	50S ribosomal protein L24P.	0.823
IF2P	NBO_418g0002	R0KKU6	R0MI97	Eukaryotic translation initiation factor 5B.	50S ribosomal protein L24P.	0.823
IF2P	NBO_41g0041	R0KKU6	R0KTC8	Eukaryotic translation initiation factor 5B.	Ribosomal protein S28e.	0.835
IF2P	NBO_445gi001	R0KKU6	R0KQE4	Eukaryotic translation initiation factor 5B.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.835
IF2P	NBO_59gi001	R0KKU6	R0M704	Eukaryotic translation initiation factor 5B.	Ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.	0.904
IF2P	NBO_6gi002	R0KKU6	R0MBB9	Eukaryotic translation initiation factor 5B.	60S ribosomal protein L37A.	0.601
IF2P	NBO_792g0001	R0KKU6	R0KMD2	Eukaryotic translation initiation factor 5B.	Ribosomal protein L36e.	0.763
IF2P	R10A1	R0KKU6	R0MF85	Eukaryotic translation initiation factor 5B.	60S ribosomal protein L10a-1.	0.892
IF2P	R23A2	R0KKU6	R0M698	Eukaryotic translation initiation factor 5B.	60S ribosomal protein L23a 2.	0.944