(10 nodes) GTPase complex network (Dictyostelium purpureum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	gpaF	GpaF, alpha subunit of heterotrimeric G-protein. (347 aa)
	gpaH	Guanine nucleotide-binding protein alpha-8 subunit. (381 aa)
	gpaB	Guanine nucleotide-binding protein alpha-2 subunit. (357 aa)
	gpaL	G-protein subunit alpha 12. (354 aa)
	gbqA	Uncharacterized protein gbqA. (556 aa)
	gpaG	G-protein subunit alpha 7. (352 aa)
	gpaI	G-protein subunit alpha 9. (341 aa)
	gpaK	Uncharacterized protein gpaK. (348 aa)
	F1A421_DICPU	Guanine nucleotide-binding protein subunit beta. (347 aa)
	gpaC	G-protein subunit alpha 3. (543 aa)

Your Current Organism:

Dictyostelium purpureum

NCBI taxonomy Id: 5786
Other names: D. purpureum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F1A421_DICPU	gbqA	F1A421	F0ZN07	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein gbqA.	0.873
F1A421_DICPU	gpaB	F1A421	F0ZES0	Guanine nucleotide-binding protein subunit beta.	Guanine nucleotide-binding protein alpha-2 subunit.	0.900
F1A421_DICPU	gpaC	F1A421	F1A4F4	Guanine nucleotide-binding protein subunit beta.	G-protein subunit alpha 3.	0.873
F1A421_DICPU	gpaF	F1A421	F0ZB60	Guanine nucleotide-binding protein subunit beta.	GpaF, alpha subunit of heterotrimeric G-protein.	0.896
F1A421_DICPU	gpaG	F1A421	F0ZPV5	Guanine nucleotide-binding protein subunit beta.	G-protein subunit alpha 7.	0.873
F1A421_DICPU	gpaH	F1A421	F0ZDH3	Guanine nucleotide-binding protein subunit beta.	Guanine nucleotide-binding protein alpha-8 subunit.	0.897
F1A421_DICPU	gpaI	F1A421	F0ZRJ1	Guanine nucleotide-binding protein subunit beta.	G-protein subunit alpha 9.	0.895
F1A421_DICPU	gpaK	F1A421	F0ZT20	Guanine nucleotide-binding protein subunit beta.	Uncharacterized protein gpaK.	0.873
F1A421_DICPU	gpaL	F1A421	F0ZHL0	Guanine nucleotide-binding protein subunit beta.	G-protein subunit alpha 12.	0.873
gbqA	F1A421_DICPU	F0ZN07	F1A421	Uncharacterized protein gbqA.	Guanine nucleotide-binding protein subunit beta.	0.873
gbqA	gpaB	F0ZN07	F0ZES0	Uncharacterized protein gbqA.	Guanine nucleotide-binding protein alpha-2 subunit.	0.579
gbqA	gpaC	F0ZN07	F1A4F4	Uncharacterized protein gbqA.	G-protein subunit alpha 3.	0.579
gbqA	gpaF	F0ZN07	F0ZB60	Uncharacterized protein gbqA.	GpaF, alpha subunit of heterotrimeric G-protein.	0.578
gbqA	gpaG	F0ZN07	F0ZPV5	Uncharacterized protein gbqA.	G-protein subunit alpha 7.	0.579
gbqA	gpaH	F0ZN07	F0ZDH3	Uncharacterized protein gbqA.	Guanine nucleotide-binding protein alpha-8 subunit.	0.579
gbqA	gpaI	F0ZN07	F0ZRJ1	Uncharacterized protein gbqA.	G-protein subunit alpha 9.	0.579
gbqA	gpaK	F0ZN07	F0ZT20	Uncharacterized protein gbqA.	Uncharacterized protein gpaK.	0.579
gbqA	gpaL	F0ZN07	F0ZHL0	Uncharacterized protein gbqA.	G-protein subunit alpha 12.	0.579
gpaB	F1A421_DICPU	F0ZES0	F1A421	Guanine nucleotide-binding protein alpha-2 subunit.	Guanine nucleotide-binding protein subunit beta.	0.900
gpaB	gbqA	F0ZES0	F0ZN07	Guanine nucleotide-binding protein alpha-2 subunit.	Uncharacterized protein gbqA.	0.579