(16 nodes) Single strand break repair, and Double-strand break repair via nonhomologous end joining network (Dictyostelium purpureum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F0Z946_DICPU	Uncharacterized protein. (483 aa)
	F0ZAU6_DICPU	Uncharacterized protein. (613 aa)
	F0ZEG6_DICPU	Uncharacterized protein. (624 aa)
	F0ZGH1_DICPU	DNA-dependent protein kinase subunit; Belongs to the PI3/PI4-kinase family. (4168 aa)
	F0ZGN6_DICPU	Poly [ADP-ribose] polymerase. (688 aa)
	F0ZI28_DICPU	Uncharacterized protein; Belongs to the ATP-dependent DNA ligase family. (1076 aa)
	F0ZNI1_DICPU	Uncharacterized protein. (794 aa)
	F0ZP77_DICPU	HIT domain-containing protein. (361 aa)
	F0ZRS3_DICPU	Poly [ADP-ribose] polymerase. (941 aa)
	F0ZSY6_DICPU	DNA ligase. (1144 aa)
	F0ZTG5_DICPU	VWFA domain-containing protein. (528 aa)
	F0ZTK8_DICPU	Lactamase_B domain-containing protein. (341 aa)
	F0ZYN3_DICPU	Uncharacterized protein. (658 aa)
	F0ZYN5_DICPU	SAP domain-containing protein. (517 aa)
	F1A0Y8_DICPU	Poly [ADP-ribose] polymerase. (774 aa)
	F1A270_DICPU	VWFA domain-containing protein. (769 aa)

Your Current Organism:

Dictyostelium purpureum

NCBI taxonomy Id: 5786
Other names: D. purpureum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F0Z946_DICPU	F0ZAU6_DICPU	F0Z946	F0ZAU6	Uncharacterized protein.	Uncharacterized protein.	0.819
F0Z946_DICPU	F0ZEG6_DICPU	F0Z946	F0ZEG6	Uncharacterized protein.	Uncharacterized protein.	0.713
F0Z946_DICPU	F0ZGH1_DICPU	F0Z946	F0ZGH1	Uncharacterized protein.	DNA-dependent protein kinase subunit; Belongs to the PI3/PI4-kinase family.	0.749
F0Z946_DICPU	F0ZGN6_DICPU	F0Z946	F0ZGN6	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.484
F0Z946_DICPU	F0ZI28_DICPU	F0Z946	F0ZI28	Uncharacterized protein.	Uncharacterized protein; Belongs to the ATP-dependent DNA ligase family.	0.878
F0Z946_DICPU	F0ZNI1_DICPU	F0Z946	F0ZNI1	Uncharacterized protein.	Uncharacterized protein.	0.998
F0Z946_DICPU	F0ZRS3_DICPU	F0Z946	F0ZRS3	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.484
F0Z946_DICPU	F0ZSY6_DICPU	F0Z946	F0ZSY6	Uncharacterized protein.	DNA ligase.	0.898
F0Z946_DICPU	F0ZTG5_DICPU	F0Z946	F0ZTG5	Uncharacterized protein.	VWFA domain-containing protein.	0.771
F0Z946_DICPU	F0ZTK8_DICPU	F0Z946	F0ZTK8	Uncharacterized protein.	Lactamase_B domain-containing protein.	0.741
F0Z946_DICPU	F0ZYN3_DICPU	F0Z946	F0ZYN3	Uncharacterized protein.	Uncharacterized protein.	0.819
F0Z946_DICPU	F0ZYN5_DICPU	F0Z946	F0ZYN5	Uncharacterized protein.	SAP domain-containing protein.	0.744
F0Z946_DICPU	F1A0Y8_DICPU	F0Z946	F1A0Y8	Uncharacterized protein.	Poly [ADP-ribose] polymerase.	0.484
F0Z946_DICPU	F1A270_DICPU	F0Z946	F1A270	Uncharacterized protein.	VWFA domain-containing protein.	0.775
F0ZAU6_DICPU	F0Z946_DICPU	F0ZAU6	F0Z946	Uncharacterized protein.	Uncharacterized protein.	0.819
F0ZAU6_DICPU	F0ZI28_DICPU	F0ZAU6	F0ZI28	Uncharacterized protein.	Uncharacterized protein; Belongs to the ATP-dependent DNA ligase family.	0.471
F0ZAU6_DICPU	F0ZNI1_DICPU	F0ZAU6	F0ZNI1	Uncharacterized protein.	Uncharacterized protein.	0.499
F0ZAU6_DICPU	F0ZSY6_DICPU	F0ZAU6	F0ZSY6	Uncharacterized protein.	DNA ligase.	0.446
F0ZAU6_DICPU	F0ZTG5_DICPU	F0ZAU6	F0ZTG5	Uncharacterized protein.	VWFA domain-containing protein.	0.539
F0ZAU6_DICPU	F1A270_DICPU	F0ZAU6	F1A270	Uncharacterized protein.	VWFA domain-containing protein.	0.515