(20 nodes) Ribosome network (Dictyostelium purpureum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F0Z610_DICPU	Uncharacterized protein. (177 aa)
	F0Z7K1_DICPU	60S ribosomal protein L8. (255 aa)
	F0ZAJ2_DICPU	Uncharacterized protein. (161 aa)
	F0ZC53_DICPU	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family. (143 aa)
	F0ZCW1_DICPU	Uncharacterized protein. (127 aa)
	F0ZF29_DICPU	Uncharacterized protein. (189 aa)
	F0ZFC3_DICPU	Uncharacterized protein. (61 aa)
	F0ZFD9_DICPU	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family. (136 aa)
	F0ZH79_DICPU	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family. (178 aa)
	F0ZI75_DICPU	40S ribosomal protein S14. (152 aa)
	F0ZJV8_DICPU	Uncharacterized protein. (130 aa)
	F0ZKC8_DICPU	Uncharacterized protein. (112 aa)
	F0ZS43_DICPU	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family. (165 aa)
	F0ZSW8_DICPU	KOW domain-containing protein. (135 aa)
	F0ZSY4_DICPU	Uncharacterized protein. (184 aa)
	F0ZTG8_DICPU	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family. (189 aa)
	F0ZVS0_DICPU	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (244 aa)
	F0ZWG0_DICPU	Uncharacterized protein. (217 aa)
	F1A1I6_DICPU	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family. (187 aa)
	F1A460_DICPU	40S ribosomal protein S29. (55 aa)

Your Current Organism:

Dictyostelium purpureum

NCBI taxonomy Id: 5786
Other names: D. purpureum

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F0Z610_DICPU	F0Z7K1_DICPU	F0Z610	F0Z7K1	Uncharacterized protein.	60S ribosomal protein L8.	0.999
F0Z610_DICPU	F0ZAJ2_DICPU	F0Z610	F0ZAJ2	Uncharacterized protein.	Uncharacterized protein.	0.999
F0Z610_DICPU	F0ZC53_DICPU	F0Z610	F0ZC53	Uncharacterized protein.	40S ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.	0.999
F0Z610_DICPU	F0ZCW1_DICPU	F0Z610	F0ZCW1	Uncharacterized protein.	Uncharacterized protein.	0.999
F0Z610_DICPU	F0ZF29_DICPU	F0Z610	F0ZF29	Uncharacterized protein.	Uncharacterized protein.	0.999
F0Z610_DICPU	F0ZFC3_DICPU	F0Z610	F0ZFC3	Uncharacterized protein.	Uncharacterized protein.	0.999
F0Z610_DICPU	F0ZFD9_DICPU	F0Z610	F0ZFD9	Uncharacterized protein.	Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.	0.999
F0Z610_DICPU	F0ZH79_DICPU	F0Z610	F0ZH79	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
F0Z610_DICPU	F0ZI75_DICPU	F0Z610	F0ZI75	Uncharacterized protein.	40S ribosomal protein S14.	0.999
F0Z610_DICPU	F0ZJV8_DICPU	F0Z610	F0ZJV8	Uncharacterized protein.	Uncharacterized protein.	0.999
F0Z610_DICPU	F0ZKC8_DICPU	F0Z610	F0ZKC8	Uncharacterized protein.	Uncharacterized protein.	0.999
F0Z610_DICPU	F0ZS43_DICPU	F0Z610	F0ZS43	Uncharacterized protein.	Ribosomal protein L12; Belongs to the universal ribosomal protein uL11 family.	0.999
F0Z610_DICPU	F0ZSW8_DICPU	F0Z610	F0ZSW8	Uncharacterized protein.	KOW domain-containing protein.	0.999
F0Z610_DICPU	F0ZSY4_DICPU	F0Z610	F0ZSY4	Uncharacterized protein.	Uncharacterized protein.	0.999
F0Z610_DICPU	F0ZTG8_DICPU	F0Z610	F0ZTG8	Uncharacterized protein.	40S ribosomal protein S5; Belongs to the universal ribosomal protein uS7 family.	0.999
F0Z610_DICPU	F0ZVS0_DICPU	F0Z610	F0ZVS0	Uncharacterized protein.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
F0Z610_DICPU	F0ZWG0_DICPU	F0Z610	F0ZWG0	Uncharacterized protein.	Uncharacterized protein.	0.999
F0Z610_DICPU	F1A1I6_DICPU	F0Z610	F1A1I6	Uncharacterized protein.	Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.999
F0Z610_DICPU	F1A460_DICPU	F0Z610	F1A460	Uncharacterized protein.	40S ribosomal protein S29.	0.999
F0Z7K1_DICPU	F0Z610_DICPU	F0Z7K1	F0Z610	60S ribosomal protein L8.	Uncharacterized protein.	0.999