(31 nodes) Breast cancer carboxy-terminal domain network (Dictyostelium purpureum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	F0ZAG3_DICPU	BRCT domain-containing protein. (247 aa)
	F1A5H1_DICPU	Uncharacterized protein. (1208 aa)
	F1A3W2_DICPU	Uncharacterized protein. (1309 aa)
	F1A2Q4_DICPU	Uncharacterized protein. (1093 aa)
	F1A033_DICPU	BRCT domain-containing protein. (498 aa)
	F0ZZI9_DICPU	Uncharacterized protein. (604 aa)
	F0ZYT3_DICPU	Poly [ADP-ribose] polymerase. (642 aa)
	F0ZYP4_DICPU	BRCT domain-containing protein. (479 aa)
	F0ZXG1_DICPU	BRCT domain-containing protein. (473 aa)
	F0ZTJ5_DICPU	Poly [ADP-ribose] polymerase; Belongs to the 14-3-3 family. (2350 aa)
	F0ZSY6_DICPU	DNA ligase. (1144 aa)
	F0ZSS9_DICPU	BRCT domain-containing protein. (788 aa)
	F0ZRS3_DICPU	Poly [ADP-ribose] polymerase. (941 aa)
	F0ZQF6_DICPU	BRCT domain-containing protein. (392 aa)
	F0ZNI1_DICPU	Uncharacterized protein. (794 aa)
	F0ZKP4_DICPU	RNA polymerase II subunit A C-terminal domain phosphatase; This promotes the activity of RNA polymerase II. (730 aa)
	F0ZI28_DICPU	Uncharacterized protein; Belongs to the ATP-dependent DNA ligase family. (1076 aa)
	F0ZHV9_DICPU	Uncharacterized protein. (802 aa)
	F0ZGY9_DICPU	Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family. (690 aa)
	F0ZGY2_DICPU	BRCT domain-containing protein. (108 aa)
	F0ZGW9_DICPU	Poly [ADP-ribose] polymerase. (1610 aa)
	F0ZGN6_DICPU	Poly [ADP-ribose] polymerase. (688 aa)
	F0ZFG0_DICPU	Uncharacterized protein. (793 aa)
	F0ZF62_DICPU	BRCT domain-containing protein. (539 aa)
	F0ZDK7_DICPU	BRCT domain-containing protein. (334 aa)
	F0ZDK6_DICPU	Uncharacterized protein. (1066 aa)
	F0ZB55_DICPU	Uncharacterized protein. (656 aa)
	F0ZA62_DICPU	Replication factor C subunit 1. (1334 aa)
	F0Z8S8_DICPU	Uncharacterized protein. (1531 aa)
	F0Z8Q4_DICPU	Uncharacterized protein. (599 aa)
	F0Z652_DICPU	Uncharacterized protein. (457 aa)

Your Current Organism:

Dictyostelium purpureum

NCBI taxonomy Id: 5786
Other names: D. purpureum

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
F0Z652_DICPU	F0ZHV9_DICPU	F0Z652	F0ZHV9	Uncharacterized protein.	Uncharacterized protein.	0.605
F0Z652_DICPU	F0ZZI9_DICPU	F0Z652	F0ZZI9	Uncharacterized protein.	Uncharacterized protein.	0.605
F0Z652_DICPU	F1A2Q4_DICPU	F0Z652	F1A2Q4	Uncharacterized protein.	Uncharacterized protein.	0.772
F0Z652_DICPU	F1A5H1_DICPU	F0Z652	F1A5H1	Uncharacterized protein.	Uncharacterized protein.	0.601
F0Z8Q4_DICPU	F0ZHV9_DICPU	F0Z8Q4	F0ZHV9	Uncharacterized protein.	Uncharacterized protein.	0.605
F0Z8Q4_DICPU	F0ZZI9_DICPU	F0Z8Q4	F0ZZI9	Uncharacterized protein.	Uncharacterized protein.	0.605
F0Z8Q4_DICPU	F1A2Q4_DICPU	F0Z8Q4	F1A2Q4	Uncharacterized protein.	Uncharacterized protein.	0.772
F0Z8Q4_DICPU	F1A5H1_DICPU	F0Z8Q4	F1A5H1	Uncharacterized protein.	Uncharacterized protein.	0.601
F0ZA62_DICPU	F0ZDK7_DICPU	F0ZA62	F0ZDK7	Replication factor C subunit 1.	BRCT domain-containing protein.	0.611
F0ZA62_DICPU	F0ZI28_DICPU	F0ZA62	F0ZI28	Replication factor C subunit 1.	Uncharacterized protein; Belongs to the ATP-dependent DNA ligase family.	0.524
F0ZA62_DICPU	F0ZSY6_DICPU	F0ZA62	F0ZSY6	Replication factor C subunit 1.	DNA ligase.	0.514
F0ZA62_DICPU	F1A2Q4_DICPU	F0ZA62	F1A2Q4	Replication factor C subunit 1.	Uncharacterized protein.	0.687
F0ZAG3_DICPU	F0ZF62_DICPU	F0ZAG3	F0ZF62	BRCT domain-containing protein.	BRCT domain-containing protein.	0.540
F0ZAG3_DICPU	F0ZSS9_DICPU	F0ZAG3	F0ZSS9	BRCT domain-containing protein.	BRCT domain-containing protein.	0.540
F0ZAG3_DICPU	F0ZXG1_DICPU	F0ZAG3	F0ZXG1	BRCT domain-containing protein.	BRCT domain-containing protein.	0.540
F0ZAG3_DICPU	F0ZYP4_DICPU	F0ZAG3	F0ZYP4	BRCT domain-containing protein.	BRCT domain-containing protein.	0.540
F0ZAG3_DICPU	F1A033_DICPU	F0ZAG3	F1A033	BRCT domain-containing protein.	BRCT domain-containing protein.	0.540
F0ZAG3_DICPU	F1A2Q4_DICPU	F0ZAG3	F1A2Q4	BRCT domain-containing protein.	Uncharacterized protein.	0.638
F0ZDK7_DICPU	F0ZA62_DICPU	F0ZDK7	F0ZA62	BRCT domain-containing protein.	Replication factor C subunit 1.	0.611
F0ZDK7_DICPU	F0ZI28_DICPU	F0ZDK7	F0ZI28	BRCT domain-containing protein.	Uncharacterized protein; Belongs to the ATP-dependent DNA ligase family.	0.637