STRINGSTRING
Tlie_0015 Tlie_0015 Tlie_0017 Tlie_0017 Tlie_0018 Tlie_0018 Tlie_0758 Tlie_0758 Tlie_0811 Tlie_0811 Tlie_0813 Tlie_0813 Tlie_0814 Tlie_0814 Tlie_0815 Tlie_0815 Tlie_0816 Tlie_0816 Tlie_0818 Tlie_0818 Tlie_0819 Tlie_0819 Tlie_0820 Tlie_0820 Tlie_0821 Tlie_0821 Tlie_1660 Tlie_1660 Tlie_1661 Tlie_1661 Tlie_1662 Tlie_1662 Tlie_1664 Tlie_1664 Tlie_1665 Tlie_1665 Tlie_1667 Tlie_1667 Tlie_1668 Tlie_1668 Tlie_1686 Tlie_1686 Tlie_1687 Tlie_1687 Tlie_1688 Tlie_1688 Tlie_1689 Tlie_1689 Tlie_1690 Tlie_1690 Tlie_1691 Tlie_1691 Tlie_1692 Tlie_1692 Tlie_1696 Tlie_1696 Tlie_1697 Tlie_1697 Tlie_1698 Tlie_1698 Tlie_1699 Tlie_1699 Tlie_1744 Tlie_1744 Tlie_1745 Tlie_1745 Tlie_1746 Tlie_1746 Tlie_1747 Tlie_1747 Tlie_1748 Tlie_1748
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
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textmining
co-expression
protein homology
Your Input:
Tlie_0015PFAM: TrkA-N domain; Ion channel; TrkA-C domain; COGs: COG0569 K+ transport systems NAD-binding component; InterPro IPR013099: IPR003148: IPR006037; KEGG: tai:Taci_0064 TrkA-N domain protein; PFAM: TrkA-N domain protein; Ion transport 2 domain protein; TrkA-C domain protein; SPTR: Putative potassium channel. (340 aa)
Tlie_0017Hypothetical protein; PFAM: Predicted permease; KEGG: hor:Hore_14720 hypothetical protein; SPTR: Putative uncharacterized protein. (158 aa)
Tlie_0018Hypothetical protein; PFAM: Predicted permease; KEGG: hor:Hore_14710 hypothetical protein; SPTR: Putative uncharacterized protein. (169 aa)
Tlie_0758PFAM: Alanine racemase, N-terminal domain; COGs: COG3457 amino acid racemase; InterPro IPR001608; KEGG: aco:Amico_0736 alanine racemase domain protein; PFAM: alanine racemase domain protein; SPTR: Amino acid racemase. (356 aa)
Tlie_0811PFAM: Tautomerase enzyme; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme; InterPro IPR010916: IPR004370: IPR018191; KEGG: aco:Amico_1236 4-oxalocrotonate tautomerase family enzyme; PFAM: 4-oxalocrotonate tautomerase; SPTR: 4-oxalocrotonate tautomerase family enzyme; TIGRFAM: 4-oxalocrotonate tautomerase family enzyme. (67 aa)
Tlie_0813Putative transcriptional regulator, GntR family; PFAM: Aminotransferase class I and II; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR004839; KEGG: tai:Taci_0315 putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; SPTR: Aminotransferase, class I and II family protein. (401 aa)
Tlie_0814PFAM: Peptidase family M48; COGs: COG0501 Zn-dependent protease with chaperone function; InterPro IPR001915; KEGG: aco:Amico_0365 peptidase M48 Ste24p; PFAM: peptidase M48 Ste24p; SPTR: Peptidase M48 Ste24p. (215 aa)
Tlie_0815PFAM: Aminotransferase class-V; COGs: COG0075 Serine-pyruvate aminotransferase/ aspartate aminotransferase; InterPro IPR000192; KEGG: tai:Taci_0909 aminotransferase class V; PFAM: aminotransferase class V; SPTR: Aminotransferase class V. (382 aa)
Tlie_0816PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; ACT domain; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; TIGRFAM: D-3-phosphoglycerate dehydrogenase; COGs: COG0111 Phosphoglycerate dehydrogenase and related dehydrogenase; InterPro IPR006140: IPR006139: IPR002912: IPR006236; KEGG: ddf:DEFDS_0857 D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; SPTR: Phosphoglycerate dehydrogenase; TIGRFAM: [...] (546 aa)
Tlie_0818PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; Metalloenzyme superfamily; TIGRFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, archaeal form; COGs: COG3635 phosphoglycerate mutase AP superfamily; InterPro IPR004456: IPR019304: IPR006124; KEGG: aco:Amico_0369 phosphonopyruvate decarboxylase-related protein; PFAM: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase; metalloenzyme domain protein; PRIAM: Phosphoglycerate mutase; SPTR: 2,3-bisphosphoglycerate-independent phosphoglycerate mutase. (404 aa)
Tlie_0819Metal dependent phosphohydrolase; PFAM: HD domain; TIGRFAM: uncharacterized domain HDIG; COGs: COG3481 HD-superfamily hydrolase; InterPro IPR006674: IPR006675: IPR003607; KEGG: aco:Amico_0370 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; SPTR: 3'-5' exoribonuclease YhaM; TIGRFAM: metal dependent phophohydrolase. (359 aa)
Tlie_0820Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family. (318 aa)
Tlie_0821Hypothetical protein. (33 aa)
Tlie_1660PFAM: Aminotransferase class I and II; COGs: COG0436 Aspartate/tyrosine/aromatic aminotransferase; InterPro IPR004839: IPR001176: IPR004838; KEGG: bbe:BBR47_45340 transaminase; PFAM: aminotransferase class I and II; SPTR: Putative aminotransferase. (383 aa)
Tlie_1661Putative transcriptional regulator, GntR family; PFAM: Aminotransferase class I and II; COGs: COG1167 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs; InterPro IPR004839; KEGG: aco:Amico_0227 putative transcriptional regulator, GntR family; PFAM: aminotransferase class I and II; SPTR: Aminotransferase, class I and II family protein. (410 aa)
Tlie_1662PFAM: Peptidase family M20/M25/M40; COGs: COG4187 Arginine degradation protein (predicted deacylase); InterPro IPR002933: IPR012166; KEGG: aco:Amico_0153 peptidase M20; PFAM: peptidase M20; SPTR: Peptidase M20. (551 aa)
Tlie_1664KEGG: aco:Amico_0379 hypothetical protein; SPTR: Putative uncharacterized protein. (323 aa)
Tlie_1665Protein of unknown function DUF6 transmembrane; PFAM: EamA-like transporter family; InterPro IPR000620; KEGG: drm:Dred_2925 hypothetical protein; PFAM: protein of unknown function DUF6 transmembrane; SPTR: Putative membrane protein. (294 aa)
Tlie_1667PFAM: OPT oligopeptide transporter protein; TIGRFAM: oligopeptide transporters, OPT superfamily; putative oligopeptide transporter, OPT family; COGs: COG1297 membrane protein; InterPro IPR004813: IPR004814; KEGG: tsi:TSIB_1774 oligopeptide transporter, OPT family; PFAM: Oligopeptide transporter OPT superfamily protein; SPTR: Oligopeptide transporter, OPT family; TIGRFAM: oligopeptide transporter, OPT family; oligopeptide transporters, OPT superfamily. (628 aa)
Tlie_1668PFAM: Coenzyme PQQ synthesis protein D (PqqD); KEGG: tko:TK1780 hypothetical protein; SPTR: Putative uncharacterized protein. (109 aa)
Tlie_1686PFAM: Endoribonuclease L-PSP; TIGRFAM: endoribonuclease L-PSP, putative; COGs: COG0251 Putative translation initiation inhibitor yjgF family; InterPro IPR006056: IPR006175: IPR019897; KEGG: pfu:PF0668 hypothetical protein; PFAM: Endoribonuclease L-PSP; SPTR: Putative uncharacterized protein; TIGRFAM: endoribonuclease L-PSP. (126 aa)
Tlie_1687PFAM: TIM-barrel signal transduction protein; COGs: COG5564 TIM-barrel protein possibly a dioxygenase; InterPro IPR009215; KEGG: rle:pRL90195 hypothetical protein; PFAM: TIM-barrel signal transduction protein; SPTR: Putative uncharacterized protein. (275 aa)
Tlie_1688PFAM: Uncharacterised protein family (UPF0261); COGs: COG5441 conserved hypothetical protein; InterPro IPR008322: IPR003006; KEGG: rhi:NGR_a02150 hypothetical protein; PFAM: Uncharacterised conserved protein UCP033271; SPTR: Putative uncharacterized protein; Belongs to the UPF0261 family. (398 aa)
Tlie_1689Hypothetical protein; KEGG: dpo:Dpse_GA25375 GA25375 gene product from transcript GA25375-RA; SPTR: Putative uncharacterized protein. (182 aa)
Tlie_1690PFAM: Cupin domain; InterPro IPR013096; KEGG: rbi:RB2501_09765 possible pectin degradation protein; PFAM: Cupin 2 conserved barrel domain protein; SPTR: Possible pectin degradation protein. (109 aa)
Tlie_1691PFAM: Peptidase dimerisation domain; COGs: COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylase; KEGG: aco:Amico_0203 peptidase M20; SPTR: Peptidase M20. (397 aa)
Tlie_1692PFAM: Amidohydrolase family; COGs: COG1574 metal-dependent hydrolase with the TIM-barrel fold; InterPro IPR013108; KEGG: aco:Amico_1758 amidohydrolase 3; PFAM: Amidohydrolase 3; SPTR: Amidohydrolase 3. (530 aa)
Tlie_1696Pyridoxal-5'-phosphate-dependent protein beta subunit; PFAM: Pyridoxal-phosphate dependent enzyme; COGs: COG0031 Cysteine synthase; InterPro IPR001926; KEGG: hor:Hore_21100 cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; SPTR: 2-amino-4-ketopentanoate thiolase beta subunit. (473 aa)
Tlie_1697KEGG: fno:Fnod_1645 hypothetical protein; SPTR: Putative uncharacterized protein. (103 aa)
Tlie_1698D-cysteine desulfhydrase; PFAM: Pyridoxal-phosphate dependent enzyme; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family; COGs: COG2515 1-aminocyclopropane-1-carboxylate deaminase; InterPro IPR005966: IPR001926; KEGG: ckr:CKR_0446 D-cysteine desulfhydrase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; PRIAM: 1-aminocyclopropane-1-carboxylate deaminase; SPTR: Putative uncharacterized protein; TIGRFAM: pyridoxal phosphate-dependent enzymes, D-cysteine desulfhydrase family. (345 aa)
Tlie_1699PFAM: Aminotransferase class-III; TIGRFAM: 4-aminobutyrate aminotransferase, prokaryotic type; COGs: COG0160 4-aminobutyrate aminotransferase and related aminotransferase; InterPro IPR005814; KEGG: pab:PAB0086 pyridoxal phosphate-dependent aminotransferase; PFAM: aminotransferase class-III; SPTR: Pyridoxal phosphate-dependent aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (463 aa)
Tlie_1744PFAM: Metallopeptidase family M24; Creatinase/Prolidase N-terminal domain; COGs: COG0006 Xaa-Pro aminopeptidase; InterPro IPR000994; KEGG: tai:Taci_0197 peptidase M24; PFAM: peptidase M24; SPTR: Xaa-Pro dipeptidase. (370 aa)
Tlie_1745Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: tai:Taci_0123 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: ABC transporter integral membrane protein. (369 aa)
Tlie_1746Inner-membrane translocator; PFAM: Branched-chain amino acid transport system / permease component; COGs: COG1172 Ribose/xylose/arabinose/galactoside ABC-type transport systems permease components; InterPro IPR001851; KEGG: tai:Taci_0122 inner-membrane translocator; PFAM: inner-membrane translocator; SPTR: ABC transporter integral membrane protein. (359 aa)
Tlie_1747Monosaccharide ABC transporter ATP-binding protein, CUT2 family; PFAM: ABC transporter; COGs: COG1129 ABC-type sugar transport system ATPase component; InterPro IPR003439: IPR017871: IPR003593; KEGG: fno:Fnod_0051 ABC transporter related; PFAM: ABC transporter related; SMART: AAA ATPase; SPTR: Sugar transport ATP-binding protein. (531 aa)
Tlie_1748Lipoprotein; KEGG: fno:Fnod_0052 lipoprotein; SPTR: Putative uncharacterized protein. (374 aa)
Your Current Organism:
Thermovirga lienii
NCBI taxonomy Id: 580340
Other names: T. lienii DSM 17291, Thermovirga lienii DSM 17291, Thermovirga lienii str. DSM 17291, Thermovirga lienii strain DSM 17291
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