STRINGSTRING
PBANKA_1239700 PBANKA_1239700 PBANKA_0919700 PBANKA_0919700 PBANKA_0918700 PBANKA_0918700 PBANKA_1428800 PBANKA_1428800 lipA lipA PBANKA_1322400 PBANKA_1322400 PBANKA_1355200 PBANKA_1355200 PBANKA_1442500 PBANKA_1442500 PBANKA_1015200 PBANKA_1015200 PBANKA_1028900 PBANKA_1028900 PBANKA_0834900 PBANKA_0834900 PBANKA_0828100 PBANKA_0828100 PBANKA_0706000 PBANKA_0706000 PBANKA_0507000 PBANKA_0507000 PBANKA_0112400 PBANKA_0112400 PBANKA_0315800 PBANKA_0315800 PBANKA_0304600 PBANKA_0304600 PBANKA_0501300 PBANKA_0501300 NTH1 NTH1 PBANKA_1034100 PBANKA_1034100 PBANKA_0812000 PBANKA_0812000 PBANKA_0811900 PBANKA_0811900 PBANKA_1129100 PBANKA_1129100 PBANKA_1121100 PBANKA_1121100
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
PBANKA_1239700S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase, putative. (889 aa)
PBANKA_0919700Fe-S cluster assembly protein, putative. (651 aa)
PBANKA_0918700A/G-specific adenine glycosylase, putative. (616 aa)
PBANKA_1428800Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial; Iron-sulfur protein (IP) subunit of succinate dehydrogenase (SDH) that is involved in complex II of the mitochondrial electron transport chain and is responsible for transferring electrons from succinate to ubiquinone (coenzyme Q). (321 aa)
lipALipoyl synthase, apicoplast; Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives. (463 aa)
PBANKA_1322400Exonuclease V, mitochondrial, putative. (352 aa)
PBANKA_1355200Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate. (914 aa)
PBANKA_1442500Elongator complex protein 3, putative. (1069 aa)
PBANKA_1015200Diphthamide biosynthesis protein 2, putative. (658 aa)
PBANKA_10289002-(3-amino-3-carboxypropyl)histidine synthase subunit 1; Required for the first step of diphthamide biosynthesis, the transfer of 3-amino-3-carboxypropyl from S-adenosyl-L-methionine to a histidine residue. Diphthamide is a post-translational modification of histidine which occurs in elongation factor 2. (476 aa)
PBANKA_0834900TFIIH basal transcription factor complex helicase XPD subunit, putative. (982 aa)
PBANKA_0828100Fumarate hydratase, putative. (675 aa)
PBANKA_0706000Anamorsin homolog; Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis, facilitating the de novo assembly of a [4Fe-4S] cluster on the cytosolic Fe-S scaffold complex. Electrons are transferred from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Together with the diflavin oxidoreductase, also required for the assembly of the diferric tyrosyl radical cofactor of ribonucleotide reductase (RN [...] (252 aa)
PBANKA_05070004-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (Ferredoxin), putative. (819 aa)
PBANKA_0112400Cytosolic Fe-S cluster assembly factor NAR1, putative; Belongs to the NARF family. (811 aa)
PBANKA_0315800Ribosome associated membrane protein RAMP4, putative. (68 aa)
PBANKA_0304600Iron-sulfur assembly protein, putative. (184 aa)
PBANKA_0501300DNA polymerase. (1097 aa)
NTH1Endonuclease III homolog; Bifunctional DNA N-glycosylase with associated apurinic/apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N-glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines; Belongs to the Nth/MutY family. (375 aa)
PBANKA_1034100FANCJ-like helicase, putative. (1069 aa)
PBANKA_0812000DNA primase large subunit; DNA primase is the polymerase that synthesizes small RNA primers for the Okazaki fragments made during discontinuous DNA replication; Belongs to the eukaryotic-type primase large subunit family. (537 aa)
PBANKA_0811900Cytosolic Fe-S cluster assembly factor NBP35, putative. (434 aa)
PBANKA_1129100DNA polymerase epsilon catalytic subunit A, putative. (2826 aa)
PBANKA_1121100Radical SAM protein, putative. (784 aa)
Your Current Organism:
Plasmodium berghei
NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA
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