(17 nodes) RNA Polymerase III Transcription network (Plasmodium berghei)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	PBANKA_0304200	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (106 aa)
	PBANKA_0605200	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1421 aa)
	PBANKA_0604500	High mobility group protein B3, putative. (2264 aa)
	PBANKA_0108400	Uncharacterized protein. (1747 aa)
	PBANKA_0608900	General transcription factor 3C polypeptide 5, putative. (866 aa)
	PBANKA_0903200	Uncharacterized protein. (937 aa)
	PBANKA_0905700	DNA-directed RNA polymerases I and III subunit RPAC1, putative. (334 aa)
	PBANKA_1015900	Transcription initiation TFIID-like, putative. (332 aa)
	PBANKA_1021900	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family. (287 aa)
	PBANKA_0942200	DNA-directed RNA polymerase III subunit RPC8, putative. (186 aa)
	PBANKA_1313000	Transcription factor IIIb subunit, putative. (721 aa)
	PBANKA_1105800	TATA-box binding protein, putative. (285 aa)
	PBANKA_1414300	Transcription factor MYB1, putative. (390 aa)
	PBANKA_1322500	DNA-directed RNA polymerase III subunit RPC5, putative. (739 aa)
	PBANKA_1324500	snRNA-activating protein complex subunit 3, putative. (600 aa)
	PBANKA_1344000	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (2012 aa)
	PBANKA_1327000	DNA-directed RNA polymerase III subunit RPC4, putative. (338 aa)

Your Current Organism:

Plasmodium berghei

NCBI taxonomy Id: 5823
Other names: P. berghei ANKA, Plasmodium berghei (strain ANKA), Plasmodium berghei ANKA, Plasmodium berghei str. ANKA, Plasmodium berghei strain ANKA

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PBANKA_0108400	PBANKA_0304200	A0A509AGU4	A0A509AE42	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.855
PBANKA_0108400	PBANKA_0604500	A0A509AGU4	A0A509AGG3	Uncharacterized protein.	High mobility group protein B3, putative.	0.981
PBANKA_0108400	PBANKA_0605200	A0A509AGU4	A0A509AEV8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.878
PBANKA_0108400	PBANKA_0608900	A0A509AGU4	A0A509AHB1	Uncharacterized protein.	General transcription factor 3C polypeptide 5, putative.	0.999
PBANKA_0108400	PBANKA_0903200	A0A509AGU4	A0A509AHP9	Uncharacterized protein.	Uncharacterized protein.	0.901
PBANKA_0108400	PBANKA_0905700	A0A509AGU4	A0A509AI77	Uncharacterized protein.	DNA-directed RNA polymerases I and III subunit RPAC1, putative.	0.827
PBANKA_0108400	PBANKA_0942200	A0A509AGU4	A0A509AMP3	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC8, putative.	0.821
PBANKA_0108400	PBANKA_1015900	A0A509AGU4	A0A509AJQ0	Uncharacterized protein.	Transcription initiation TFIID-like, putative.	0.782
PBANKA_0108400	PBANKA_1021900	A0A509AGU4	A0A509AJV9	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC6; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs; Belongs to the eukaryotic RPC34/RPC39 RNA polymerase subunit family.	0.847
PBANKA_0108400	PBANKA_1105800	A0A509AGU4	A0A509ARY3	Uncharacterized protein.	TATA-box binding protein, putative.	0.782
PBANKA_0108400	PBANKA_1313000	A0A509AGU4	A0A509APD2	Uncharacterized protein.	Transcription factor IIIb subunit, putative.	0.998
PBANKA_0108400	PBANKA_1322500	A0A509AGU4	A0A509AWK2	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC5, putative.	0.846
PBANKA_0108400	PBANKA_1327000	A0A509AGU4	A0A077XG48	Uncharacterized protein.	DNA-directed RNA polymerase III subunit RPC4, putative.	0.996
PBANKA_0108400	PBANKA_1344000	A0A509AGU4	A0A509AXN1	Uncharacterized protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.926
PBANKA_0304200	PBANKA_0108400	A0A509AE42	A0A509AGU4	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.855
PBANKA_0304200	PBANKA_0604500	A0A509AE42	A0A509AGG3	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	High mobility group protein B3, putative.	0.921
PBANKA_0304200	PBANKA_0605200	A0A509AE42	A0A509AEV8	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
PBANKA_0304200	PBANKA_0608900	A0A509AE42	A0A509AHB1	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	General transcription factor 3C polypeptide 5, putative.	0.827
PBANKA_0304200	PBANKA_0903200	A0A509AE42	A0A509AHP9	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	Uncharacterized protein.	0.997
PBANKA_0304200	PBANKA_0905700	A0A509AE42	A0A509AI77	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	DNA-directed RNA polymerases I and III subunit RPAC1, putative.	0.999

page 1 of 14

Server load: low (14%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About