STRINGSTRING
ERN43049.1 ERN43049.1 ERN42609.1 ERN42609.1 ERN42540.1 ERN42540.1 xseA xseA xseB xseB ERN41775.1 ERN41775.1 ERN41663.1 ERN41663.1 ERN41187.1 ERN41187.1 ERN40517.1 ERN40517.1 ERN40078.1 ERN40078.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ERN43049.1COG: Predicted permease, DMT superfamily; PFAM: EamA - EamA-like transporter family. (316 aa)
ERN42609.1Hypothetical protein. (141 aa)
ERN42540.1PFAM: DUF3318 - Protein of unknown function (DUF3318). (204 aa)
xseAExodeoxyribonuclease VII, large subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseA family. (397 aa)
xseBExonuclease VII small subunit; Bidirectionally degrades single-stranded DNA into large acid- insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides; Belongs to the XseB family. (89 aa)
ERN41775.1Hypothetical protein. (88 aa)
ERN41663.1Hypothetical protein. (184 aa)
ERN41187.1Hypothetical protein. (115 aa)
ERN40517.1Hypothetical protein. (175 aa)
ERN40078.1Hypothetical protein. (267 aa)
Your Current Organism:
Rubidibacter lacunae
NCBI taxonomy Id: 582515
Other names: R. lacunae KORDI 51-2, Rubidibacter lacunae KCTC 40015, Rubidibacter lacunae KORDI 51-2, Rubidibacter lacunae UTEX L2944
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