STRINGSTRING
Caka_0686 Caka_0686 menB menB menD menD Caka_1141 Caka_1141 Caka_1874 Caka_1874 Caka_1875 Caka_1875
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Caka_0686KEGG: ote:Oter_3649 isochorismate synthase; TIGRFAM: isochorismate synthase; PFAM: Chorismate binding-like. (474 aa)
menBNaphthoate synthase; Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4-dihydroxy-2- naphthoyl-CoA (DHNA-CoA). (277 aa)
menD2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylic acid synthase/2-oxoglutarate decarboxylase; Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2- succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Belongs to the TPP enzyme family. MenD subfamily. (582 aa)
Caka_1141PFAM: alpha/beta hydrolase fold; KEGG: rrs:RoseRS_4115 alpha/beta hydrolase fold. (254 aa)
Caka_1874PFAM: AMP-dependent synthetase and ligase; KEGG: amr:AM1_3754 O-succinylbenzoic acid--CoA ligase. (459 aa)
Caka_1875TIGRFAM: o-succinylbenzoic acid (OSB) synthetase; KEGG: amr:AM1_3753 O-succinylbenzoate synthase; PFAM: Mandelate racemase/muconate lactonizing protein. (332 aa)
Your Current Organism:
Coraliomargarita akajimensis
NCBI taxonomy Id: 583355
Other names: C. akajimensis DSM 45221, Coraliomargarita akajimensis DSM 45221, Coraliomargarita akajimensis str. DSM 45221, Coraliomargarita akajimensis strain DSM 45221
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