(34 nodes) Host cellular component network (Proteus mirabilis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AND11354.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (391 aa)
	idsF	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (89 aa)
	AOUC001_00530	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology. (723 aa)
	AND11713.1	Cell division protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (719 aa)
	AND11732.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (332 aa)
	AND15091.1	Peptidase C80; Derived by automated computational analysis using gene prediction method: Protein Homology. (2951 aa)
	AND12179.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (260 aa)
	AND12278.1	Flagellar protein regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (137 aa)
	AND12332.1	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	AND12339.1	Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	AND12583.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	AND12604.1	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	ail_2	Attachment protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (178 aa)
	ompW	Hypothetical protein; Receptor for colicin S4; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	AND13079.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (129 aa)
	AND13088.1	GNAT family acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (252 aa)
	AND13190.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (700 aa)
	AND13346.1	Portal protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (443 aa)
	AND13353.1	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	AND13471.1	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (232 aa)
	AND13491.1	Phage head morphogenesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (354 aa)
	AND13579.1	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (730 aa)
	AND13793.1	Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (247 aa)
	AND13818.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (373 aa)
	AND13825.1	Lysozyme; Derived by automated computational analysis using gene prediction method: Protein Homology. (156 aa)
	sseL	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (352 aa)
	AND13994.1	Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)
	AND14325.1	RTX toxin; Derived by automated computational analysis using gene prediction method: Protein Homology. (2776 aa)
	AND14420.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (106 aa)
	fimH_1	Fimbrial protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (310 aa)
	AND14792.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (455 aa)
	AND14917.1	AAA family ATPase; Derived by automated computational analysis using gene prediction method: Protein Homology. (555 aa)
	AND14997.1	Invertase; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	AND15062.1	Resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology. (83 aa)

Your Current Organism:

Proteus mirabilis

NCBI taxonomy Id: 584
Other names: ATCC 29906, CCUG 26767, CIP 103181, DSM 4479, LMG 3257, LMG:3257, NCTC 11938, P. mirabilis

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AND12179.1	AND15091.1	AOUC001_04565	AOUC001_04560	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Peptidase C80; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AND13190.1	AND13579.1	AOUC001_09970	AOUC001_12040	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AND13190.1	AOUC001_00530	AOUC001_09970	AOUC001_00530	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AND13579.1	AND13190.1	AOUC001_12040	AOUC001_09970	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AND13579.1	AOUC001_00530	AOUC001_12040	AOUC001_00530	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AND14997.1	AND15062.1	AOUC001_19795	AOUC001_20125	Invertase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595
AND15062.1	AND14997.1	AOUC001_20125	AOUC001_19795	Resolvase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Invertase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.595
AND15091.1	AND12179.1	AOUC001_04560	AOUC001_04565	Peptidase C80; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.900
AOUC001_00530	AND13190.1	AOUC001_00530	AOUC001_09970	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903
AOUC001_00530	AND13579.1	AOUC001_00530	AOUC001_12040	Hypothetical protein; Frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.	Type VI secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.903