Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| aapP | mdlB | ECIAI1_3415 | ECIAI1_0453 | Amino-acid transporter subunit; Function of strongly homologous gene; transporter. | Putative fused ATPase and permease component of metabolite ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.824 |
| aapP | nikD | ECIAI1_3415 | ECIAI1_3626 | Amino-acid transporter subunit; Function of strongly homologous gene; transporter. | Nickel transporter subunit; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | 0.754 |
| aapP | sapD | ECIAI1_3415 | ECIAI1_1316 | Amino-acid transporter subunit; Function of strongly homologous gene; transporter. | Antimicrobial peptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily. | 0.645 |
| artP | btuD | ECIAI1_0903 | ECIAI1_1765 | Arginine transporter subunit; Function experimentally demonstrated in the studied species; transporter. | Vitamin B12 transporter subunit : ATP-binding component of ABC superfamily; Function experimentally demonstrated in the studied species; transporter. | 0.467 |
| artP | nikD | ECIAI1_0903 | ECIAI1_3626 | Arginine transporter subunit; Function experimentally demonstrated in the studied species; transporter. | Nickel transporter subunit; Part of the ABC transporter complex NikABCDE involved in nickel import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Nickel importer (TC 3.A.1.5.3) family. | 0.773 |
| artP | sapD | ECIAI1_0903 | ECIAI1_1316 | Arginine transporter subunit; Function experimentally demonstrated in the studied species; transporter. | Antimicrobial peptide transporter subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily. | 0.756 |
| atpD | rbbA | ECIAI1_3916 | ECIAI1_3631 | F1 sector of membrane-bound ATP synthase, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Fused ribosome-associated ATPase: ATP-binding protein; Function experimentally demonstrated in the studied species; enzyme. | 0.492 |
| atpD | recA | ECIAI1_3916 | ECIAI1_2791 | F1 sector of membrane-bound ATP synthase, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.605 |
| atpD | yadG | ECIAI1_3916 | ECIAI1_0125 | F1 sector of membrane-bound ATP synthase, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Putative transporter subunit: ATP-binding component of ABC superfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.487 |
| atpD | ybhF | ECIAI1_3916 | ECIAI1_0830 | F1 sector of membrane-bound ATP synthase, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits. | Putative transporter fused subunits of ABC superfamily: ATP-binding components; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.487 |
| btuD | artP | ECIAI1_1765 | ECIAI1_0903 | Vitamin B12 transporter subunit : ATP-binding component of ABC superfamily; Function experimentally demonstrated in the studied species; transporter. | Arginine transporter subunit; Function experimentally demonstrated in the studied species; transporter. | 0.467 |
| btuD | ecfA1_2 | ECIAI1_1765 | ECIAI1_3051 | Vitamin B12 transporter subunit : ATP-binding component of ABC superfamily; Function experimentally demonstrated in the studied species; transporter. | Putative ATP-binding protein of ABC transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.605 |
| btuD | mdlB | ECIAI1_1765 | ECIAI1_0453 | Vitamin B12 transporter subunit : ATP-binding component of ABC superfamily; Function experimentally demonstrated in the studied species; transporter. | Putative fused ATPase and permease component of metabolite ABC transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.445 |
| ccmA | ecfA1_2 | ECIAI1_2283 | ECIAI1_3051 | Heme exporter subunit; Part of the ABC transporter complex CcmAB involved in the biogenesis of c-type cytochromes; once thought to export heme, this seems not to be the case, but its exact role is uncertain. Responsible for energy coupling to the transport system. | Putative ATP-binding protein of ABC transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.435 |
| clpA | hslU | ECIAI1_0922 | ECIAI1_4136 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity; Function experimentally demonstrated in the studied species; enzyme; Belongs to the ClpA/ClpB family. | Molecular chaperone and ATPase component of HslUV protease; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. | 0.865 |
| clpA | recA | ECIAI1_0922 | ECIAI1_2791 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity; Function experimentally demonstrated in the studied species; enzyme; Belongs to the ClpA/ClpB family. | DNA strand exchange and recombination protein with protease and nuclease activity; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.426 |
| clpA | ruvB | ECIAI1_0922 | ECIAI1_1947 | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity; Function experimentally demonstrated in the studied species; enzyme; Belongs to the ClpA/ClpB family. | ATP-dependent DNA helicase, component of RuvABC resolvasome; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.464 |
| clpV1_4 | hslU | ECIAI1_0232 | ECIAI1_4136 | Putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the ClpA/ClpB family. | Molecular chaperone and ATPase component of HslUV protease; ATPase subunit of a proteasome-like degradation complex; this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis. | 0.539 |
| clpV1_4 | ruvB | ECIAI1_0232 | ECIAI1_1947 | Putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the ClpA/ClpB family. | ATP-dependent DNA helicase, component of RuvABC resolvasome; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.424 |
| cydC | yehX | ECIAI1_0926 | ECIAI1_2207 | Fused cysteine transporter subunits of ABC superfamily: membrane component; Function experimentally demonstrated in the studied species; transporter. | Putative transporter subunit: ATP-binding component of ABC superfamily transporter; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. | 0.458 |
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