11 items (Escherichia coli UMN026) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	secM	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family. (170 aa)
	yacC	Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (172 aa)
	yceB	Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein. (186 aa)
	yniB	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component. (178 aa)
	yoaH	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0181 family. (59 aa)
	yfeY	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; 7764507. (191 aa)
	ypfN	Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (66 aa)
	yggN	Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (239 aa)
	yhfK	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component. (700 aa)
	yhjJ	Putative zinc-dependent peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (498 aa)
	yidQ	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component. (110 aa)

Your Current Organism:

Escherichia coli UMN026

NCBI taxonomy Id: 585056
Other names: E. coli UMN026

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
secM	yacC	ECUMN_0097	ECUMN_0119	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.770
secM	yceB	ECUMN_0097	ECUMN_1237	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.	0.756
secM	yfeY	ECUMN_0097	ECUMN_2753	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; 7764507.	0.773
secM	yggN	ECUMN_0097	ECUMN_3313	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.774
secM	yhfK	ECUMN_0097	ECUMN_3821	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component.	0.722
secM	yhjJ	ECUMN_0097	ECUMN_4034	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Putative zinc-dependent peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.737
secM	yidQ	ECUMN_0097	ECUMN_4219	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component.	0.771
secM	yniB	ECUMN_0097	ECUMN_2015	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component.	0.772
secM	yoaH	ECUMN_0097	ECUMN_2103	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0181 family.	0.731
secM	ypfN	ECUMN_0097	ECUMN_2785	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.763
yacC	secM	ECUMN_0119	ECUMN_0097	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Regulator of secA translation; Regulates secA expression by translational coupling of the secM secA operon. Translational pausing at a specific Pro residue 5 residues before the end of the protein may allow disruption of a mRNA repressor helix that normally suppresses secA translation initiation. Belongs to the SecM family.	0.770
yacC	yceB	ECUMN_0119	ECUMN_1237	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative lipoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; lipoprotein.	0.706
yacC	yfeY	ECUMN_0119	ECUMN_2753	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; 7764507.	0.764
yacC	yggN	ECUMN_0119	ECUMN_3313	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.772
yacC	yhfK	ECUMN_0119	ECUMN_3821	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component.	0.739
yacC	yhjJ	ECUMN_0119	ECUMN_4034	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Putative zinc-dependent peptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.723
yacC	yidQ	ECUMN_0119	ECUMN_4219	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component.	0.772
yacC	yniB	ECUMN_0119	ECUMN_2015	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component.	0.769
yacC	yoaH	ECUMN_0119	ECUMN_2103	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0181 family.	0.703
yacC	ypfN	ECUMN_0119	ECUMN_2785	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.771