STRINGSTRING
sfsA sfsA ligT ligT hrpB hrpB yafK yafK ybiS ybiS ybiT ybiT ycbB ycbB ynhG ynhG erfK erfK yfaY yfaY CAR14123.1 CAR14123.1 CAR14124.1 CAR14124.1 CAR14125.1 CAR14125.1 CAR14126.1 CAR14126.1 CAR14127.1 CAR14127.1 CAR14795.1 CAR14795.1 CAR14796.1 CAR14796.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
sfsAPutative regulator; Binds to DNA non-specifically. Could be a regulatory factor involved in maltose metabolism. (234 aa)
ligT2'-5' RNA ligase; Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester; Belongs to the 2H phosphoesterase superfamily. ThpR family. (176 aa)
hrpBATP-dependent (RNA) helicase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (809 aa)
yafKConserved hypothetical protein; Homologs of previously reported genes of unknown function. (246 aa)
ybiSConserved hypothetical protein; Homologs of previously reported genes of unknown function; 9298646. (306 aa)
ybiTPutative transporter fused subunits of ABC superfamily: ATP-binding components; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (531 aa)
ycbBPutative exported enzyme; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (615 aa)
ynhGConserved hypothetical protein; Homologs of previously reported genes of unknown function. (334 aa)
erfKConserved hypothetical protein; Homologs of previously reported genes of unknown function. (310 aa)
yfaYConserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the CinA family. (402 aa)
CAR14123.1Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin. (328 aa)
CAR14124.1Hypothetical protein from bacteriophage origin; No homology to any previously reported sequences; extrachromosomal origin. (407 aa)
CAR14125.1Hypothetical protein from bacteriophage origin; No homology to any previously reported sequences; extrachromosomal origin. (71 aa)
CAR14126.1Hypothetical protein from bacteriophage origin; No homology to any previously reported sequences; extrachromosomal origin. (400 aa)
CAR14127.1Hypothetical protein from bacteriophage origin; No homology to any previously reported sequences; extrachromosomal origin. (427 aa)
CAR14795.1Conserved Hypothetical protein; Homologs of previously reported genes of unknown function. (239 aa)
CAR14796.1Putative cytoplasmic protein; Homologs of previously reported genes of unknown function; putative factor. (176 aa)
Your Current Organism:
Escherichia coli UMN026
NCBI taxonomy Id: 585056
Other names: E. coli UMN026
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