10 items (Escherichia coli UMN026) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	osmB	Lipoprotein; Function experimentally demonstrated in the studied species; lipoprotein. (72 aa)
	ydiY	Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (252 aa)
	yfaZ	Putative outer membrane porin protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (180 aa)
	bcsZ	Fragment of cellulose synthase subunit (part 1); Gene remnant; enzyme; Belongs to the glycosyl hydrolase 8 (cellulase D) family. (368 aa)
	bcsB	Regulator of cellulose synthase, cyclic di-GMP binding; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family. (779 aa)
	bcsA	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme. (250 aa)
	yhjR	Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (62 aa)
	bcsE	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (523 aa)
	bcsF	Conserved hypothetical protein; Homologs of previously reported genes of unknown function. (63 aa)
	bcsG	Putative endoglucanase involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (559 aa)

Your Current Organism:

Escherichia coli UMN026

NCBI taxonomy Id: 585056
Other names: E. coli UMN026

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
bcsA	bcsB	ECUMN_4043	ECUMN_4040	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme.	Regulator of cellulose synthase, cyclic di-GMP binding; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	0.809
bcsA	bcsE	ECUMN_4043	ECUMN_4045	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme.	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.953
bcsA	bcsF	ECUMN_4043	ECUMN_4046	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.582
bcsA	bcsG	ECUMN_4043	ECUMN_4047	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme.	Putative endoglucanase involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.885
bcsA	bcsZ	ECUMN_4043	ECUMN_4039	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme.	Fragment of cellulose synthase subunit (part 1); Gene remnant; enzyme; Belongs to the glycosyl hydrolase 8 (cellulase D) family.	0.753
bcsA	yfaZ	ECUMN_4043	ECUMN_2591	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme.	Putative outer membrane porin protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.	0.463
bcsA	yhjR	ECUMN_4043	ECUMN_4044	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.951
bcsB	bcsA	ECUMN_4040	ECUMN_4043	Regulator of cellulose synthase, cyclic di-GMP binding; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme.	0.809
bcsB	bcsE	ECUMN_4040	ECUMN_4045	Regulator of cellulose synthase, cyclic di-GMP binding; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.902
bcsB	bcsF	ECUMN_4040	ECUMN_4046	Regulator of cellulose synthase, cyclic di-GMP binding; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.862
bcsB	bcsG	ECUMN_4040	ECUMN_4047	Regulator of cellulose synthase, cyclic di-GMP binding; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Putative endoglucanase involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.916
bcsB	bcsZ	ECUMN_4040	ECUMN_4039	Regulator of cellulose synthase, cyclic di-GMP binding; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Fragment of cellulose synthase subunit (part 1); Gene remnant; enzyme; Belongs to the glycosyl hydrolase 8 (cellulase D) family.	0.992
bcsB	yhjR	ECUMN_4040	ECUMN_4044	Regulator of cellulose synthase, cyclic di-GMP binding; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.809
bcsE	bcsA	ECUMN_4045	ECUMN_4043	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Fragment of cellulose synthase, catalytic subunit (part 1); Gene remnant; enzyme.	0.953
bcsE	bcsB	ECUMN_4045	ECUMN_4040	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Regulator of cellulose synthase, cyclic di-GMP binding; Binds the cellulose synthase activator, bis-(3'-5') cyclic diguanylic acid (c-di-GMP); Belongs to the AcsB/BcsB family.	0.902
bcsE	bcsF	ECUMN_4045	ECUMN_4046	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.993
bcsE	bcsG	ECUMN_4045	ECUMN_4047	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Putative endoglucanase involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	0.991
bcsE	bcsZ	ECUMN_4045	ECUMN_4039	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Fragment of cellulose synthase subunit (part 1); Gene remnant; enzyme; Belongs to the glycosyl hydrolase 8 (cellulase D) family.	0.931
bcsE	osmB	ECUMN_4045	ECUMN_1586	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Lipoprotein; Function experimentally demonstrated in the studied species; lipoprotein.	0.529
bcsE	ydiY	ECUMN_4045	ECUMN_2011	Putative protease involved in cellulose biosynthesis; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.	Conserved hypothetical protein; Homologs of previously reported genes of unknown function.	0.695