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ybjC ybjC rimK rimK ybjN ybjN potF potF potG potG potH potH potI potI ybjO ybjO rumB rumB potD potD potC potC potB potB potA potA ydcS ydcS ydcT ydcT ydcU ydcU ydcV ydcV
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ybjCConserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component. (95 aa)
rimKRibosomal protein S6 modification protein; Is an L-glutamate ligase that catalyzes the ATP-dependent post-translational addition of glutamate residues to the C-terminus of ribosomal protein S6 (RpsF). Is also able to catalyze the synthesis of poly-alpha-glutamate in vitro, via ATP hydrolysis from unprotected glutamate as substrate. The number of glutamate residues added to either RpsF or to poly-alpha-glutamate changes with pH. Belongs to the RimK family. (300 aa)
ybjNConserved hypothetical protein; Homologs of previously reported genes of unknown function. (158 aa)
potFPutrescine transporter subunit: periplasmic-binding component of ABC superfamily; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (370 aa)
potGPutrescine transporter subunit: ATP-binding component of ABC superfamily; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system. (377 aa)
potHPutrescine transporter subunit: membrane component of ABC superfamily; Function experimentally demonstrated in the studied species; transporter. (314 aa)
potIPutrescine transporter subunit: membrane component of ABC superfamily; Function experimentally demonstrated in the studied species; transporter. (281 aa)
ybjOConserved hypothetical protein; Homologs of previously reported genes of unknown function; putative membrane component. (162 aa)
rumB23S rRNA m(5)U747 methyltransferase; Catalyzes the formation of 5-methyl-uridine at position 747 (m5U747) in 23S rRNA; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. RlmC subfamily. (375 aa)
potDPolyamine transporter subunit; Required for the activity of the bacterial periplasmic transport system of putrescine; Belongs to the bacterial solute-binding protein PotD/PotF family. (348 aa)
potCPolyamine transporter subunit; Function experimentally demonstrated in the studied species; transporter. (264 aa)
potBPolyamine transporter subunit; Function experimentally demonstrated in the studied species; transporter. (287 aa)
potAPolyamine transporter subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (378 aa)
ydcSPutative spermidine/putrescine transporter subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (381 aa)
ydcTPutative spermidine/putrescine transporter subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the ABC transporter superfamily. (337 aa)
ydcUPutative spermidine/putrescine transporter subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (313 aa)
ydcVPutative spermidine/putrescine transporter subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (264 aa)
Your Current Organism:
Escherichia coli UMN026
NCBI taxonomy Id: 585056
Other names: E. coli UMN026
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