5 items (Escherichia coli UMN026) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	ydbA	Putative autotransported outer membrane protein involved in cell adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor. (1939 aa)
	CAR14006.1	Putative intimin ((attaching and effacing protein) or invasin protein (sivH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor. (735 aa)
	CAR14133.1	Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin. (417 aa)
	CAR14138.1	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin. (564 aa)
	yjhR	Fragment of Putative superfamily I DNA helicase (part 1); Gene remnant; putative enzyme. (338 aa)

Your Current Organism:

Escherichia coli UMN026

NCBI taxonomy Id: 585056
Other names: E. coli UMN026

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CAR14006.1	CAR14133.1	ECUMN_2829	ECUMN_2962	Putative intimin ((attaching and effacing protein) or invasin protein (sivH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin.	0.766
CAR14006.1	CAR14138.1	ECUMN_2829	ECUMN_2967	Putative intimin ((attaching and effacing protein) or invasin protein (sivH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.768
CAR14006.1	ydbA	ECUMN_2829	ECUMN_1651	Putative intimin ((attaching and effacing protein) or invasin protein (sivH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Putative autotransported outer membrane protein involved in cell adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.	0.772
CAR14006.1	yjhR	ECUMN_2829	ECUMN_4911	Putative intimin ((attaching and effacing protein) or invasin protein (sivH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	Fragment of Putative superfamily I DNA helicase (part 1); Gene remnant; putative enzyme.	0.660
CAR14133.1	CAR14006.1	ECUMN_2962	ECUMN_2829	Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin.	Putative intimin ((attaching and effacing protein) or invasin protein (sivH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.766
CAR14133.1	CAR14138.1	ECUMN_2962	ECUMN_2967	Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin.	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.770
CAR14133.1	ydbA	ECUMN_2962	ECUMN_1651	Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin.	Putative autotransported outer membrane protein involved in cell adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.	0.773
CAR14133.1	yjhR	ECUMN_2962	ECUMN_4911	Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin.	Fragment of Putative superfamily I DNA helicase (part 1); Gene remnant; putative enzyme.	0.719
CAR14138.1	CAR14006.1	ECUMN_2967	ECUMN_2829	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Putative intimin ((attaching and effacing protein) or invasin protein (sivH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.768
CAR14138.1	CAR14133.1	ECUMN_2967	ECUMN_2962	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin.	0.770
CAR14138.1	ydbA	ECUMN_2967	ECUMN_1651	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Putative autotransported outer membrane protein involved in cell adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.	0.772
CAR14138.1	yjhR	ECUMN_2967	ECUMN_4911	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	Fragment of Putative superfamily I DNA helicase (part 1); Gene remnant; putative enzyme.	0.725
ydbA	CAR14006.1	ECUMN_1651	ECUMN_2829	Putative autotransported outer membrane protein involved in cell adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.	Putative intimin ((attaching and effacing protein) or invasin protein (sivH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.772
ydbA	CAR14133.1	ECUMN_1651	ECUMN_2962	Putative autotransported outer membrane protein involved in cell adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.	Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin.	0.773
ydbA	CAR14138.1	ECUMN_1651	ECUMN_2967	Putative autotransported outer membrane protein involved in cell adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.772
ydbA	yjhR	ECUMN_1651	ECUMN_4911	Putative autotransported outer membrane protein involved in cell adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.	Fragment of Putative superfamily I DNA helicase (part 1); Gene remnant; putative enzyme.	0.713
yjhR	CAR14006.1	ECUMN_4911	ECUMN_2829	Fragment of Putative superfamily I DNA helicase (part 1); Gene remnant; putative enzyme.	Putative intimin ((attaching and effacing protein) or invasin protein (sivH-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor.	0.660
yjhR	CAR14133.1	ECUMN_4911	ECUMN_2962	Fragment of Putative superfamily I DNA helicase (part 1); Gene remnant; putative enzyme.	Conserved hypothetical protein from bacteriophage origin; Homologs of previously reported genes of unknown function; extrachromosomal origin.	0.719
yjhR	CAR14138.1	ECUMN_4911	ECUMN_2967	Fragment of Putative superfamily I DNA helicase (part 1); Gene remnant; putative enzyme.	Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.	0.725
yjhR	ydbA	ECUMN_4911	ECUMN_1651	Fragment of Putative superfamily I DNA helicase (part 1); Gene remnant; putative enzyme.	Putative autotransported outer membrane protein involved in cell adhesion; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative receptor.	0.713