STRINGSTRING
ydiR ydiR fixA fixA fixB fixB ydiQ ydiQ ygcR ygcR
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
ydiRPutative electron transfer flavoprotein subunit, FAD-binding; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (312 aa)
fixAPutative electron transfer flavoprotein subunit, ETFP adenine nucleotide-binding domain; Required for anaerobic carnitine reduction. May bring reductant to CaiA. (256 aa)
fixBProtein FixB; Required for anaerobic carnitine reduction. May bring reductant to CaiA. (313 aa)
ydiQPutative electron transfer flavoprotein subunit (etfB-like); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (254 aa)
ygcRPutative flavoprotein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier. (259 aa)
Your Current Organism:
Escherichia coli UMN026
NCBI taxonomy Id: 585056
Other names: E. coli UMN026
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