STRINGSTRING
fimZ fimZ sdiA sdiA uvrY uvrY narL narL narX narX fnr fnr narP narP evgA evgA evgS evgS narQ narQ csrA csrA csrD csrD yhjB yhjB
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
fimZDNA-binding transcriptional regulator, isolated component of a two-component regulator system; Function experimentally demonstrated in the studied species; regulator. (210 aa)
sdiADNA-binding transcriptional activator; Function experimentally demonstrated in the studied species; regulator. (240 aa)
uvrYDNA-binding response regulator in two-component regulatory system with BarA; Function experimentally demonstrated in the studied species; regulator. (218 aa)
narLDNA-binding response regulator in two-component regulatory system with NarX (or NarQ); Function experimentally demonstrated in the studied species; regulator. (216 aa)
narXSensory histidine kinase in two-component regulatory system with NarL; Function experimentally demonstrated in the studied species; regulator. (598 aa)
fnrDNA-binding transcriptional dual regulator, global regulator of anaerobic growth; Function experimentally demonstrated in the studied species; regulator. (250 aa)
narPDNA-binding response regulator in two-component regulatory system with NarQ or NarX; Function experimentally demonstrated in the studied species; regulator. (215 aa)
evgADNA-binding response regulator in two-component regulatory system with EvgS; Function experimentally demonstrated in the studied species; regulator. (204 aa)
evgSHybrid sensory histidine kinase in two-component regulatory system with EvgA; Function experimentally demonstrated in the studied species; regulator. (1197 aa)
narQSensory histidine kinase in two-component regulatory system with NarP (NarL); Function experimentally demonstrated in the studied species; regulator. (566 aa)
csrAPleiotropic regulatory protein for carbon source metabolism; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small [...] (61 aa)
csrDInner membrane associated factor modulating specific RNAseE dependent RNA degradation pathways; Function experimentally demonstrated in the studied species; factor. (646 aa)
yhjBPutative DNA-binding response regulator in two-component regulatory system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (200 aa)
Your Current Organism:
Escherichia coli IAI39
NCBI taxonomy Id: 585057
Other names: E. coli IAI39
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