(14 nodes) Periplasmic side of plasma membrane network (Escherichia coli IAI39)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Your Input:
	dacA	D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Function experimentally demonstrated in the studied species; enzyme; Belongs to the peptidase S11 family. (403 aa)
	ynfG	Oxidoreductase, Fe-S subunit; Function experimentally demonstrated in the studied species; carrier. (205 aa)
	ynfE	Oxidoreductase subunit; Function experimentally demonstrated in the studied species; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (808 aa)
	hyaC	Hydrogenase 1, b-type cytochrome subunit; Function experimentally demonstrated in the studied species; carrier. (235 aa)
	hyaB	Hydrogenase 1, large subunit; Function experimentally demonstrated in the studied species; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (597 aa)
	hyaA	Hydrogenase 1, small subunit; Function experimentally demonstrated in the studied species; enzyme. (372 aa)
	dmsB	Dimethyl sulfoxide reductase, anaerobic, subunit B; Function experimentally demonstrated in the studied species; enzyme. (205 aa)
	dmsA	Dimethyl sulfoxide reductase, anaerobic, subunit A; Function experimentally demonstrated in the studied species; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. (814 aa)
	ccmH	Heme lyase, CcmH subunit; Possible subunit of a heme lyase. (350 aa)
	ccmG	Periplasmic thioredoxin of cytochrome c-type biogenesis; Function experimentally demonstrated in the studied species; enzyme. (185 aa)
	ccmE	Periplasmic heme chaperone; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family. (159 aa)
	hybC	Hydrogenase 2, large subunit; Function experimentally demonstrated in the studied species; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family. (567 aa)
	nrfF	Heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF; Possible subunit of a heme lyase. (127 aa)
	nrfG	Heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG; Function experimentally demonstrated in the studied species; factor. (198 aa)

Your Current Organism:

Escherichia coli IAI39

NCBI taxonomy Id: 585057
Other names: E. coli IAI39

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ccmE	ccmG	ECIAI39_2335	ECIAI39_2333	Periplasmic heme chaperone; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	Periplasmic thioredoxin of cytochrome c-type biogenesis; Function experimentally demonstrated in the studied species; enzyme.	0.994
ccmE	ccmH	ECIAI39_2335	ECIAI39_2332	Periplasmic heme chaperone; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	Heme lyase, CcmH subunit; Possible subunit of a heme lyase.	0.991
ccmE	nrfF	ECIAI39_2335	ECIAI39_4497	Periplasmic heme chaperone; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	Heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF; Possible subunit of a heme lyase.	0.846
ccmE	nrfG	ECIAI39_2335	ECIAI39_4498	Periplasmic heme chaperone; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	Heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG; Function experimentally demonstrated in the studied species; factor.	0.525
ccmG	ccmE	ECIAI39_2333	ECIAI39_2335	Periplasmic thioredoxin of cytochrome c-type biogenesis; Function experimentally demonstrated in the studied species; enzyme.	Periplasmic heme chaperone; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	0.994
ccmG	ccmH	ECIAI39_2333	ECIAI39_2332	Periplasmic thioredoxin of cytochrome c-type biogenesis; Function experimentally demonstrated in the studied species; enzyme.	Heme lyase, CcmH subunit; Possible subunit of a heme lyase.	0.994
ccmG	nrfF	ECIAI39_2333	ECIAI39_4497	Periplasmic thioredoxin of cytochrome c-type biogenesis; Function experimentally demonstrated in the studied species; enzyme.	Heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF; Possible subunit of a heme lyase.	0.878
ccmG	nrfG	ECIAI39_2333	ECIAI39_4498	Periplasmic thioredoxin of cytochrome c-type biogenesis; Function experimentally demonstrated in the studied species; enzyme.	Heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG; Function experimentally demonstrated in the studied species; factor.	0.737
ccmH	ccmE	ECIAI39_2332	ECIAI39_2335	Heme lyase, CcmH subunit; Possible subunit of a heme lyase.	Periplasmic heme chaperone; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.	0.991
ccmH	ccmG	ECIAI39_2332	ECIAI39_2333	Heme lyase, CcmH subunit; Possible subunit of a heme lyase.	Periplasmic thioredoxin of cytochrome c-type biogenesis; Function experimentally demonstrated in the studied species; enzyme.	0.994
ccmH	nrfF	ECIAI39_2332	ECIAI39_4497	Heme lyase, CcmH subunit; Possible subunit of a heme lyase.	Heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfF; Possible subunit of a heme lyase.	0.512
ccmH	nrfG	ECIAI39_2332	ECIAI39_4498	Heme lyase, CcmH subunit; Possible subunit of a heme lyase.	Heme lyase (NrfEFG) for insertion of heme into c552, subunit NrfG; Function experimentally demonstrated in the studied species; factor.	0.621
dmsA	dmsB	ECIAI39_2254	ECIAI39_2253	Dimethyl sulfoxide reductase, anaerobic, subunit A; Function experimentally demonstrated in the studied species; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Dimethyl sulfoxide reductase, anaerobic, subunit B; Function experimentally demonstrated in the studied species; enzyme.	0.999
dmsA	hyaA	ECIAI39_2254	ECIAI39_2174	Dimethyl sulfoxide reductase, anaerobic, subunit A; Function experimentally demonstrated in the studied species; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hydrogenase 1, small subunit; Function experimentally demonstrated in the studied species; enzyme.	0.551
dmsA	hyaB	ECIAI39_2254	ECIAI39_2173	Dimethyl sulfoxide reductase, anaerobic, subunit A; Function experimentally demonstrated in the studied species; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hydrogenase 1, large subunit; Function experimentally demonstrated in the studied species; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.600
dmsA	hyaC	ECIAI39_2254	ECIAI39_2172	Dimethyl sulfoxide reductase, anaerobic, subunit A; Function experimentally demonstrated in the studied species; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hydrogenase 1, b-type cytochrome subunit; Function experimentally demonstrated in the studied species; carrier.	0.513
dmsA	hybC	ECIAI39_2254	ECIAI39_3490	Dimethyl sulfoxide reductase, anaerobic, subunit A; Function experimentally demonstrated in the studied species; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Hydrogenase 2, large subunit; Function experimentally demonstrated in the studied species; enzyme; Belongs to the [NiFe]/[NiFeSe] hydrogenase large subunit family.	0.600
dmsA	ynfG	ECIAI39_2254	ECIAI39_1469	Dimethyl sulfoxide reductase, anaerobic, subunit A; Function experimentally demonstrated in the studied species; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	Oxidoreductase, Fe-S subunit; Function experimentally demonstrated in the studied species; carrier.	0.891
dmsB	dmsA	ECIAI39_2253	ECIAI39_2254	Dimethyl sulfoxide reductase, anaerobic, subunit B; Function experimentally demonstrated in the studied species; enzyme.	Dimethyl sulfoxide reductase, anaerobic, subunit A; Function experimentally demonstrated in the studied species; enzyme; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.	0.999
dmsB	hyaA	ECIAI39_2253	ECIAI39_2174	Dimethyl sulfoxide reductase, anaerobic, subunit B; Function experimentally demonstrated in the studied species; enzyme.	Hydrogenase 1, small subunit; Function experimentally demonstrated in the studied species; enzyme.	0.571