6 items (Escherichia coli IAI39) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	purB	Adenylosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily. (456 aa)
	aspA	Aspartate ammonia-lyase; Function experimentally demonstrated in the studied species; enzyme. (478 aa)
	fumC	Fumarate hydratase (fumarase C),aerobic Class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily. (467 aa)
	fumA	Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (548 aa)
	fumB	Anaerobic class I fumarate hydratase (fumarase B); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family. (548 aa)
	argH	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme. (457 aa)

Your Current Organism:

Escherichia coli IAI39

NCBI taxonomy Id: 585057
Other names: E. coli IAI39

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
argH	aspA	ECIAI39_3029	ECIAI39_4604	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	Aspartate ammonia-lyase; Function experimentally demonstrated in the studied species; enzyme.	0.909
argH	fumA	ECIAI39_3029	ECIAI39_1446	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.843
argH	fumB	ECIAI39_3029	ECIAI39_4546	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	Anaerobic class I fumarate hydratase (fumarase B); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.843
argH	fumC	ECIAI39_3029	ECIAI39_1447	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	Fumarate hydratase (fumarase C),aerobic Class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.823
argH	purB	ECIAI39_3029	ECIAI39_2006	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	Adenylosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.920
aspA	argH	ECIAI39_4604	ECIAI39_3029	Aspartate ammonia-lyase; Function experimentally demonstrated in the studied species; enzyme.	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	0.909
aspA	purB	ECIAI39_4604	ECIAI39_2006	Aspartate ammonia-lyase; Function experimentally demonstrated in the studied species; enzyme.	Adenylosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	0.906
fumA	argH	ECIAI39_1446	ECIAI39_3029	Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	0.843
fumA	fumB	ECIAI39_1446	ECIAI39_4546	Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	Anaerobic class I fumarate hydratase (fumarase B); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.939
fumA	fumC	ECIAI39_1446	ECIAI39_1447	Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	Fumarate hydratase (fumarase C),aerobic Class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.994
fumB	argH	ECIAI39_4546	ECIAI39_3029	Anaerobic class I fumarate hydratase (fumarase B); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	0.843
fumB	fumA	ECIAI39_4546	ECIAI39_1446	Anaerobic class I fumarate hydratase (fumarase B); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.939
fumB	fumC	ECIAI39_4546	ECIAI39_1447	Anaerobic class I fumarate hydratase (fumarase B); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	Fumarate hydratase (fumarase C),aerobic Class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	0.974
fumC	argH	ECIAI39_1447	ECIAI39_3029	Fumarate hydratase (fumarase C),aerobic Class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	0.823
fumC	fumA	ECIAI39_1447	ECIAI39_1446	Fumarate hydratase (fumarase C),aerobic Class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	Fumarate hydratase (fumarase A), aerobic Class I; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.994
fumC	fumB	ECIAI39_1447	ECIAI39_4546	Fumarate hydratase (fumarase C),aerobic Class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.	Anaerobic class I fumarate hydratase (fumarase B); Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.	0.974
purB	argH	ECIAI39_2006	ECIAI39_3029	Adenylosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	Argininosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme.	0.920
purB	aspA	ECIAI39_2006	ECIAI39_4604	Adenylosuccinate lyase; Function experimentally demonstrated in the studied species; enzyme; Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily.	Aspartate ammonia-lyase; Function experimentally demonstrated in the studied species; enzyme.	0.906