(13 nodes) Mixed, incl. Gdt1 family, and Ribonuclease II/R network (Synechococcus sp. KORDI49)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	AII45278.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (684 aa)
	ycf12	Photosystem II reaction center protein ycf12; A core subunit of photosystem II (PSII); Belongs to the Ycf12 family. (35 aa)
	AII45299.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (124 aa)
	AII45300.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (107 aa)
	AII45301.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (105 aa)
	AII45302.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the RNR ribonuclease family. (779 aa)
	AII45304.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (143 aa)
	AII45307.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (488 aa)
	AII45308.1	Modulator of DNA gyrase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (455 aa)
	AII46777.1	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (187 aa)
	AII46778.1	Deoxyribodipyrimidine photo-lyase; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the DNA photolyase family. (477 aa)
	rph	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. (252 aa)
	AII46956.1	Derived by automated computational analysis using gene prediction method: GeneMarkS+. (214 aa)

Your Current Organism:

Synechococcus sp. KORDI49

NCBI taxonomy Id: 585423
Other names: S. sp. KORDI-49, Synechococcus sp. KORDI-49

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AII45278.1	AII45302.1	KR49_02215	KR49_02340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the RNR ribonuclease family.	0.659
AII45278.1	AII46777.1	KR49_02215	KR49_10025	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	NUDIX hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.673
AII45278.1	AII46956.1	KR49_02215	KR49_11110	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.787
AII45278.1	rph	KR49_02215	KR49_10325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.	0.897
AII45299.1	AII45300.1	KR49_02325	KR49_02330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.799
AII45299.1	AII45301.1	KR49_02325	KR49_02335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.799
AII45299.1	AII45302.1	KR49_02325	KR49_02340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the RNR ribonuclease family.	0.567
AII45299.1	AII45304.1	KR49_02325	KR49_02350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.561
AII45299.1	ycf12	KR49_02325	KR49_02320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Photosystem II reaction center protein ycf12; A core subunit of photosystem II (PSII); Belongs to the Ycf12 family.	0.542
AII45300.1	AII45299.1	KR49_02330	KR49_02325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.799
AII45300.1	AII45301.1	KR49_02330	KR49_02335	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.834
AII45300.1	AII45302.1	KR49_02330	KR49_02340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the RNR ribonuclease family.	0.573
AII45300.1	AII45304.1	KR49_02330	KR49_02350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.572
AII45300.1	ycf12	KR49_02330	KR49_02320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Photosystem II reaction center protein ycf12; A core subunit of photosystem II (PSII); Belongs to the Ycf12 family.	0.542
AII45301.1	AII45299.1	KR49_02335	KR49_02325	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.799
AII45301.1	AII45300.1	KR49_02335	KR49_02330	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.834
AII45301.1	AII45302.1	KR49_02335	KR49_02340	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the RNR ribonuclease family.	0.574
AII45301.1	AII45304.1	KR49_02335	KR49_02350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.570
AII45301.1	ycf12	KR49_02335	KR49_02320	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Photosystem II reaction center protein ycf12; A core subunit of photosystem II (PSII); Belongs to the Ycf12 family.	0.542
AII45302.1	AII45278.1	KR49_02340	KR49_02215	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+; Belongs to the RNR ribonuclease family.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.659