(14 nodes) Processing of Intronless Pre-mRNAs, and YTH domain network (Babesia bovis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	17.m07544	Uncharacterized protein. (513 aa)
	17.m07554	YT521-B-like family protein. (427 aa)
	17.m07867	Cleavage and polyadenylation specificity factor subunit 2. (943 aa)
	23.m06565	Uncharacterized protein. (331 aa)
	23.m06130	Pre-mRNA cleavage complex II protein Clp1, putative. (538 aa)
	23.m06376	WD repeat domain containing protein. (851 aa)
	18.m09946	Symplekin_C domain-containing protein. (1195 aa)
	18.m06371	CSTF2_hinge domain-containing protein. (359 aa)
	18.m06566	WD domain, G-beta repeat containing protein. (400 aa)
	21.m03067	Uncharacterized protein. (891 aa)
	21.m03044	Cleavage and polyadenylation specifity factor. (709 aa)
	21.m02896	CPSF_A domain-containing protein. (1850 aa)
	19.m02041	RNA recognition motif domain containing protein. (279 aa)
	16.m00761	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (512 aa)

Your Current Organism:

Babesia bovis

NCBI taxonomy Id: 5865
Other names: B. bovis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
16.m00761	17.m07544	A7AXB4	A7ANP1	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.993
16.m00761	17.m07554	A7AXB4	A7ANQ1	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	YT521-B-like family protein.	0.999
16.m00761	17.m07867	A7AXB4	A7APS1	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
16.m00761	18.m06371	A7AXB4	A7ATY8	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	CSTF2_hinge domain-containing protein.	0.925
16.m00761	18.m06566	A7AXB4	A7AUM5	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	WD domain, G-beta repeat containing protein.	0.812
16.m00761	18.m09946	A7AXB4	A7AT77	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Symplekin_C domain-containing protein.	0.999
16.m00761	19.m02041	A7AXB4	A7AW01	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	RNA recognition motif domain containing protein.	0.925
16.m00761	21.m02896	A7AXB4	A7AVW5	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	CPSF_A domain-containing protein.	0.999
16.m00761	21.m03044	A7AXB4	A7AVD4	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Cleavage and polyadenylation specifity factor.	0.998
16.m00761	21.m03067	A7AXB4	A7AV79	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.976
16.m00761	23.m06130	A7AXB4	A7ARR6	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Pre-mRNA cleavage complex II protein Clp1, putative.	0.836
16.m00761	23.m06376	A7AXB4	A7ASM2	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	WD repeat domain containing protein.	0.996
16.m00761	23.m06565	A7AXB4	A7ARI6	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	Uncharacterized protein.	0.995
17.m07544	16.m00761	A7ANP1	A7AXB4	Uncharacterized protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.993
17.m07544	17.m07554	A7ANP1	A7ANQ1	Uncharacterized protein.	YT521-B-like family protein.	0.999
17.m07544	17.m07867	A7ANP1	A7APS1	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
17.m07544	18.m06371	A7ANP1	A7ATY8	Uncharacterized protein.	CSTF2_hinge domain-containing protein.	0.698
17.m07544	18.m09946	A7ANP1	A7AT77	Uncharacterized protein.	Symplekin_C domain-containing protein.	0.988
17.m07544	19.m02041	A7ANP1	A7AW01	Uncharacterized protein.	RNA recognition motif domain containing protein.	0.698
17.m07544	21.m02896	A7ANP1	A7AVW5	Uncharacterized protein.	CPSF_A domain-containing protein.	0.999