(54 nodes) Cytosolic ribosome network (Babesia bovis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	17.m07150	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family. (264 aa)
	BBOV_III000550	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family. (204 aa)
	17.m07920	Ribosomal L27e protein family protein. (146 aa)
	17.m08006	Ribosomal protein L2 family protein. (257 aa)
	23.m05776	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	BBOV_IV005360	Ribosomal protein S16, putative; Belongs to the universal ribosomal protein uS9 family. (149 aa)
	BBOV_IV005370	Ribosomal protein L13, putative. (202 aa)
	BBOV_IV005460	60S ribosomal protein L11, putative; Belongs to the universal ribosomal protein uL5 family. (171 aa)
	23.m06299	Ribosomal protein L31, putative. (118 aa)
	23.m06051	eIF2A domain-containing protein. (541 aa)
	23.m06473	40S ribosomal protein S25; Belongs to the eukaryotic ribosomal protein eS25 family. (104 aa)
	23.m06087	Ribosomal protein L14, putative. (133 aa)
	BBOV_II000880	Ribosomal protein L6e, putative. (197 aa)
	18.m06077	60S ribosomal protein L44 protein; Belongs to the eukaryotic ribosomal protein eL42 family. (105 aa)
	23.m06046	Ribosomal protein L35. (123 aa)
	19.m02050	Ribosomal protein L19; Belongs to the eukaryotic ribosomal protein eL19 family. (181 aa)
	19.m02168	Ribosomal protein L3, putative; Belongs to the universal ribosomal protein uL3 family. (393 aa)
	BBOV_IV002240	40S ribosomal protein S28. (67 aa)
	21.m02928	Ribosomal protein L34, putative. (157 aa)
	BBOV_II006110	Ribosomal protein RPL4A. (360 aa)
	18.m06424	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family. (147 aa)
	18.m06411	Uncharacterized protein. (223 aa)
	17.m07556	60S acidic ribosomal protein P2 (L12EI); Belongs to the eukaryotic ribosomal protein P1/P2 family. (112 aa)
	BBOV_II004750	Ribosomal L39 protein. (51 aa)
	18.m06381	40S ribosomal protein S11, putative; Belongs to the universal ribosomal protein uS17 family. (156 aa)
	BBOV_II003460	60S ribosomal protein L36. (116 aa)
	18.m06229	Ribosomal protein L13, putative. (202 aa)
	BBOV_II001650	40S ribosomal protein S3 protein, putative. (223 aa)
	17.m07161	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family. (154 aa)
	17.m07191	Ribosomal_L28e domain-containing protein. (146 aa)
	BBOV_III001970	60S ribosomal protein L35a, putative. (115 aa)
	17.m07202	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family. (60 aa)
	BBOV_III002940	40S ribosomal protein S26; Belongs to the eukaryotic ribosomal protein eS26 family. (115 aa)
	BBOV_III003180	Ribosomal protein L1, putative. (217 aa)
	17.m07582	Ribosomal protein L15, putative; Belongs to the universal ribosomal protein uL15 family. (147 aa)
	BBOV_III006680	Ribosomal protein L7Ae containing protein. (108 aa)
	17.m10563	S1 motif domain-containing protein. (973 aa)
	17.m07710	60S acidic ribosomal protein p1, putative; Belongs to the eukaryotic ribosomal protein P1/P2 family. (118 aa)
	17.m07730	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family. (79 aa)
	17.m07741	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (273 aa)
	BBOV_III008670	Ribosomal protein L24 family protein. (137 aa)
	17.m07807	Plectin/S10 domain containing protein. (113 aa)
	BBOV_III009350	40S ribosomal protein S7; Belongs to the eukaryotic ribosomal protein eS7 family. (194 aa)
	BBOV_III010500	Ribosomal protein L10, putative. (227 aa)
	BBOV_III010520	Ribosomal protein L21, putative. (160 aa)
	BBOV_III010580	Ribosomal protein L7Ae family protein. (269 aa)
	17.m07917	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family. (59 aa)
	17.m07388	Ribosomal protein L37; Binds to the 23S rRNA. (98 aa)
	17.m07414	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family. (188 aa)
	17.m07462	eIF2A domain-containing protein. (734 aa)
	17.m07125	40S ribosomal protein S19, putative. (171 aa)
	17.m07124	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family. (167 aa)
	BBOV_III000980	60S ribosomal protein L7, putative. (259 aa)
	17.m07113	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family. (145 aa)

Your Current Organism:

Babesia bovis

NCBI taxonomy Id: 5865
Other names: B. bovis

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
17.m07113	17.m07124	A7AM80	A7AM93	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S12; Belongs to the eukaryotic ribosomal protein eS12 family.	0.999
17.m07113	17.m07125	A7AM80	A7AM94	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S19, putative.	0.999
17.m07113	17.m07150	A7AM80	A7AMD1	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S3a; Belongs to the eukaryotic ribosomal protein eS1 family.	0.999
17.m07113	17.m07161	A7AM80	A7AME1	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.	0.999
17.m07113	17.m07191	A7AM80	A7AMH8	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	Ribosomal_L28e domain-containing protein.	0.999
17.m07113	17.m07202	A7AM80	A7AMJ2	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S30; Belongs to the eukaryotic ribosomal protein eS30 family.	0.999
17.m07113	17.m07388	A7AM80	A7AN60	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	Ribosomal protein L37; Binds to the 23S rRNA.	0.999
17.m07113	17.m07414	A7AM80	A7AN92	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L18a; Belongs to the eukaryotic ribosomal protein eL20 family.	0.999
17.m07113	17.m07556	A7AM80	A7ANQ3	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	60S acidic ribosomal protein P2 (L12EI); Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
17.m07113	17.m07582	A7AM80	A7ANT3	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	Ribosomal protein L15, putative; Belongs to the universal ribosomal protein uL15 family.	0.999
17.m07113	17.m07710	A7AM80	A7AP88	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	60S acidic ribosomal protein p1, putative; Belongs to the eukaryotic ribosomal protein P1/P2 family.	0.999
17.m07113	17.m07730	A7AM80	A7APB1	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.	0.999
17.m07113	17.m07741	A7AM80	A7APC2	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
17.m07113	17.m07807	A7AM80	A7APJ9	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	Plectin/S10 domain containing protein.	0.999
17.m07113	17.m07917	A7AM80	A7APY1	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L29; Belongs to the eukaryotic ribosomal protein eL29 family.	0.999
17.m07113	17.m07920	A7AM80	A7APY6	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	Ribosomal L27e protein family protein.	0.999
17.m07113	17.m08006	A7AM80	A7AQ98	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	Ribosomal protein L2 family protein.	0.999
17.m07113	17.m10563	A7AM80	A7ANW1	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	S1 motif domain-containing protein.	0.858
17.m07113	18.m06077	A7AM80	A7AT04	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	60S ribosomal protein L44 protein; Belongs to the eukaryotic ribosomal protein eL42 family.	0.999
17.m07113	18.m06229	A7AM80	A7ATH4	40S ribosomal protein S12P, putative; Belongs to the universal ribosomal protein uS12 family.	Ribosomal protein L13, putative.	0.999