(20 nodes) Ribosome assembly network (Babesia bovis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	17.m10547	Ribosomal protein L20, putative; Belongs to the bacterial ribosomal protein bL20 family. (121 aa)
	17.m07125	40S ribosomal protein S19, putative. (171 aa)
	17.m07161	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family. (154 aa)
	BBOV_III002260	Uncharacterized protein. (234 aa)
	EIF6	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis. (249 aa)
	17.m07546	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family. (388 aa)
	17.m07741	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits. (273 aa)
	17.m07771	Small GTP-binding protein domain containing protein. (340 aa)
	BBOV_III010500	Ribosomal protein L10, putative. (227 aa)
	23.m05776	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10. (312 aa)
	23.m05967	C2H2-type domain-containing protein. (393 aa)
	23.m05729	Ribosome biogenesis Brix protein, putative. (281 aa)
	BBOV_II000880	Ribosomal protein L6e, putative. (197 aa)
	18.m06124	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family. (180 aa)
	18.m06424	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family. (147 aa)
	BBOV_II006670	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family. (220 aa)
	21.m02927	Elongation factor Tu-like protein. (1222 aa)
	19.m02110	Brix domain containing protein. (322 aa)
	19.m02064	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes. (225 aa)
	BBOV_I000230	40S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family. (192 aa)

Your Current Organism:

Babesia bovis

NCBI taxonomy Id: 5865
Other names: B. bovis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
17.m07125	17.m07161	A7AM94	A7AME1	40S ribosomal protein S19, putative.	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.	0.999
17.m07125	17.m07741	A7AM94	A7APC2	40S ribosomal protein S19, putative.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
17.m07125	18.m06124	A7AM94	A7AT56	40S ribosomal protein S19, putative.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.424
17.m07125	18.m06424	A7AM94	A7AU50	40S ribosomal protein S19, putative.	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family.	0.999
17.m07125	19.m02064	A7AM94	A7AWU1	40S ribosomal protein S19, putative.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.950
17.m07125	21.m02927	A7AM94	A7AVU9	40S ribosomal protein S19, putative.	Elongation factor Tu-like protein.	0.886
17.m07125	23.m05776	A7AM94	A7AQJ6	40S ribosomal protein S19, putative.	60S acidic ribosomal protein P0; Ribosomal protein P0 is the functional equivalent of E.coli protein L10.	0.999
17.m07125	23.m05967	A7AM94	A7AQT3	40S ribosomal protein S19, putative.	C2H2-type domain-containing protein.	0.880
17.m07125	BBOV_I000230	A7AM94	A7AX44	40S ribosomal protein S19, putative.	40S ribosomal protein S5, putative; Belongs to the universal ribosomal protein uS7 family.	0.999
17.m07125	BBOV_II000880	A7AM94	A7ASY7	40S ribosomal protein S19, putative.	Ribosomal protein L6e, putative.	0.999
17.m07125	BBOV_II006670	A7AM94	A7AUK6	40S ribosomal protein S19, putative.	Uncharacterized protein; Belongs to the universal ribosomal protein uL22 family.	0.973
17.m07125	BBOV_III010500	A7AM94	A7APX0	40S ribosomal protein S19, putative.	Ribosomal protein L10, putative.	0.999
17.m07125	EIF6	A7AM94	A7ANL7	40S ribosomal protein S19, putative.	Eukaryotic translation initiation factor 6; Binds to the 60S ribosomal subunit and prevents its association with the 40S ribosomal subunit to form the 80S initiation complex in the cytoplasm. May also be involved in ribosome biogenesis.	0.806
17.m07161	17.m07125	A7AME1	A7AM94	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.	40S ribosomal protein S19, putative.	0.999
17.m07161	17.m07546	A7AME1	A7ANP3	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.	Ribosome biogenesis protein NOP53; May play a role in ribosome biogenesis. Belongs to the NOP53 family.	0.997
17.m07161	17.m07741	A7AME1	A7APC2	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.	40S ribosomal protein SA; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits.	0.999
17.m07161	17.m10547	A7AME1	A7ANI5	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.	Ribosomal protein L20, putative; Belongs to the bacterial ribosomal protein bL20 family.	0.999
17.m07161	18.m06124	A7AME1	A7AT56	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.	60S ribosome subunit biogenesis protein NIP7 homolog; Required for proper 27S pre-rRNA processing and 60S ribosome subunit assembly; Belongs to the NIP7 family.	0.858
17.m07161	18.m06424	A7AME1	A7AU50	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.	40S ribosomal protein S15, putative; Belongs to the universal ribosomal protein uS19 family.	0.999
17.m07161	19.m02064	A7AME1	A7AWU1	60S ribosomal protein L23, putative; Belongs to the universal ribosomal protein uL23 family.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.987