(58 nodes) RNA-binding domain superfamily network (Babesia bovis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	BBOV_II005790	U1 snRNP, putative. (247 aa)
	18.m10000	Uncharacterized protein. (424 aa)
	18.m06413	RNA recognition motif (RRM)-containing protein. (383 aa)
	BBOV_II004860	RNA recognition motif (RRM)-containing protein. (224 aa)
	18.m06380	Uncharacterized protein. (412 aa)
	18.m06273	Eukaryotic translation initiation factor 3 subunit B; Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome; Belongs to the eIF-3 subunit B family. (732 aa)
	18.m06220	Splicing factor, arginine/serine-rich 3, putative. (239 aa)
	18.m06144	Uncharacterized protein. (515 aa)
	BBOV_II001870	RNA recognition motif containing protein. (253 aa)
	18.m06138	RNA-binding protein P22H7.02c, putative. (702 aa)
	18.m06089	Uncharacterized protein. (456 aa)
	18.m06012	RRM domain-containing protein. (409 aa)
	23.m06326	RRM domain-containing protein. (361 aa)
	23.m06047	G-patch domain-containing protein. (265 aa)
	23.m05983	Ribonucleoprotein, putative. (306 aa)
	23.m05955	CwfJ C-terminus 1-like protein, putative. (377 aa)
	BBOV_IV008500	Ser/Arg-rich splicing factor, putative. (188 aa)
	23.m06515	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (585 aa)
	BBOV_IV008110	Nuclear cap-binding protein subunit 2. (172 aa)
	23.m05938	Uncharacterized protein. (400 aa)
	BBOV_IV006850	Splicing factor, arginine/serine-rich 3, putative. (140 aa)
	BBOV_IV006730	Single stranded G-strand telomeric DNA-binding protein, putative. (196 aa)
	BBOV_IV006680	RNA recognition motif containing protein. (382 aa)
	BBOV_IV006520	RNA binding motif containing protein. (278 aa)
	23.m06496	RRM domain-containing protein. (201 aa)
	23.m05791	Uncharacterized protein. (90 aa)
	21.m02926	RNA binding protein, putative. (806 aa)
	19.m02027	RNA recognition motif. (A.k.a. RRM, RBD, or RNP) domain containing protein. (244 aa)
	17.m07117	RRM domain-containing protein. (837 aa)
	17.m07155	Splicing factor, CC1-like family protein. (488 aa)
	17.m07184	RNA recognition motif domain containing protein. (98 aa)
	17.m07309	RRM domain-containing protein. (275 aa)
	17.m07322	RNA recognition motif domain containing protein. (271 aa)
	17.m07378	U2 small nuclear ribonucleoprotein B', putative. (285 aa)
	17.m07410	RNA recognition motif domain containing protein. (643 aa)
	BBOV_III005750	U2 small nuclear ribonucleoprotein B', putative. (213 aa)
	17.m07552	RNA recognition motif domaining containing protein. (280 aa)
	17.m07721	RRM domain-containing protein. (93 aa)
	17.m07743	Surp module family protein. (717 aa)
	17.m07753	RNA recognition motif domain containing protein. (362 aa)
	17.m07809	RNA recognition motif domain containing protein. (344 aa)
	17.m07855	Uncharacterized protein. (950 aa)
	17.m07928	RRM domain-containing protein. (119 aa)
	23.m05815	RNA recognition motif containing protein. (187 aa)
	23.m06328	Uncharacterized protein. (660 aa)
	23.m06095	RNA recognition motif (RRM)-containing protein. (129 aa)
	BBOV_IV004370	Eukaryotic translation initiation factor 3 subunit G; RNA-binding component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation. This subunit can bind 18S rRNA. (268 aa)
	23.m06463	RRM domain-containing protein. (280 aa)
	23.m05750	Uncharacterized protein. (215 aa)
	23.m06028	RNA-binding protein, putative. (248 aa)
	19.m02315	RNA recognition motif. (A.k.a. RRM, RBD, or RNP) domain containing protein. (110 aa)
	19.m02179	RNA recognition motif. (A.k.a. RRM, RBD, or RNP) domain containing protein. (420 aa)
	19.m02195	RNA binding protein, putative. (163 aa)
	19.m02854	Uncharacterized protein. (130 aa)
	19.m02041	RNA recognition motif domain containing protein. (279 aa)
	21.m02756	RRM domain-containing protein. (828 aa)
	21.m02739	Uncharacterized protein. (292 aa)
	18.m06483	Pre-mRNA branch site protein p14, putative. (122 aa)

Your Current Organism:

Babesia bovis

NCBI taxonomy Id: 5865
Other names: B. bovis

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
17.m07117	17.m07721	A7AM85	A7APA1	RRM domain-containing protein.	RRM domain-containing protein.	0.587
17.m07117	17.m07753	A7AM85	A7APD8	RRM domain-containing protein.	RNA recognition motif domain containing protein.	0.540
17.m07117	17.m07809	A7AM85	A7APK1	RRM domain-containing protein.	RNA recognition motif domain containing protein.	0.587
17.m07117	18.m06089	A7AM85	A7AT19	RRM domain-containing protein.	Uncharacterized protein.	0.587
17.m07117	18.m06220	A7AM85	A7ATG4	RRM domain-containing protein.	Splicing factor, arginine/serine-rich 3, putative.	0.770
17.m07117	19.m02041	A7AM85	A7AW01	RRM domain-containing protein.	RNA recognition motif domain containing protein.	0.630
17.m07117	19.m02315	A7AM85	A7AWX7	RRM domain-containing protein.	RNA recognition motif. (A.k.a. RRM, RBD, or RNP) domain containing protein.	0.540
17.m07117	21.m02756	A7AM85	A7AV60	RRM domain-containing protein.	RRM domain-containing protein.	0.587
17.m07117	23.m05750	A7AM85	A7AQK4	RRM domain-containing protein.	Uncharacterized protein.	0.587
17.m07117	23.m05983	A7AM85	A7ART3	RRM domain-containing protein.	Ribonucleoprotein, putative.	0.540
17.m07117	23.m06496	A7AM85	A7AR24	RRM domain-containing protein.	RRM domain-containing protein.	0.587
17.m07117	BBOV_II001870	A7AM85	A7AT82	RRM domain-containing protein.	RNA recognition motif containing protein.	0.587
17.m07117	BBOV_II005790	A7AM85	A7AUB9	RRM domain-containing protein.	U1 snRNP, putative.	0.645
17.m07117	BBOV_IV006680	A7AM85	A7AR55	RRM domain-containing protein.	RNA recognition motif containing protein.	0.762
17.m07117	BBOV_IV006730	A7AM85	A7AR60	RRM domain-containing protein.	Single stranded G-strand telomeric DNA-binding protein, putative.	0.587
17.m07117	BBOV_IV006850	A7AM85	A7AR72	RRM domain-containing protein.	Splicing factor, arginine/serine-rich 3, putative.	0.837
17.m07117	BBOV_IV008110	A7AM85	A7ARJ6	RRM domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.771
17.m07117	BBOV_IV008500	A7AM85	A7ARN5	RRM domain-containing protein.	Ser/Arg-rich splicing factor, putative.	0.587
17.m07155	17.m07928	A7AMD5	A7APZ7	Splicing factor, CC1-like family protein.	RRM domain-containing protein.	0.697
17.m07155	18.m06012	A7AMD5	A7AST4	Splicing factor, CC1-like family protein.	RRM domain-containing protein.	0.607