(29 nodes) RNA Pol II CTD phosphorylation and interaction with CE network (Babesia bovis)

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

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Others

textmining

co-expression

protein homology

Your Input:
	17.m07541	mRNA capping enzyme, C-terminal domain containing protein. (409 aa)
	17.m07044	KOW motif family protein. (864 aa)
	17.m07366	Uncharacterized protein. (263 aa)
	17.m07372	RNA_pol_L_2 domain-containing protein. (92 aa)
	17.m07387	RNA polymerases N / 8 kDa subunit family protein. (73 aa)
	17.m07533	RNA polymerase Rpb4 family protein. (129 aa)
	17.m07565	mRNA capping enzyme, large subunit family protein. (717 aa)
	17.m07603	Cyclin N-terminal domain-containing protein. (306 aa)
	17.m07695	BSD domain-containing protein. (604 aa)
	17.m07800	Uncharacterized protein. (209 aa)
	17.m07860	RNA polymerase Rpb5, N-terminal domain containing protein. (205 aa)
	17.m07871	DNA repair helicase rad25 family protein. (770 aa)
	23.m06188	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	23.m05994	DNA-directed RNA polymerase II, putative. (175 aa)
	23.m06454	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (586 aa)
	18.m06094	DNA-directed RNA polymerase subunit I, putative. (154 aa)
	18.m06162	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1207 aa)
	18.m06472	MAT1 domain-containing protein. (175 aa)
	18.m06627	DNA-directed RNA polymerase 2 subunit, putative; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family. (163 aa)
	21.m02831	DNA excision repair helicase. (822 aa)
	21.m02816	Transcriptional factor 2 subunit. (364 aa)
	21.m02970	Uncharacterized protein. (219 aa)
	19.m02381	Uncharacterized protein. (75 aa)
	19.m02023	DNA-directed RNA polymerase II, putative. (382 aa)
	19.m02399	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1746 aa)
	BBOV_V000100	Uncharacterized protein. (321 aa)
	BBOV_V000110	RpoC2-N-terminal. (355 aa)
	BBOV_V000120	RpoC1. (567 aa)
	BBOV_V000130	RpoB. (971 aa)

Your Current Organism:

Babesia bovis

NCBI taxonomy Id: 5865
Other names: B. bovis

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
17.m07044	17.m07366	A7AM03	A7AN26	KOW motif family protein.	Uncharacterized protein.	0.999
17.m07044	17.m07372	A7AM03	A7AN34	KOW motif family protein.	RNA_pol_L_2 domain-containing protein.	0.999
17.m07044	17.m07387	A7AM03	A7AN58	KOW motif family protein.	RNA polymerases N / 8 kDa subunit family protein.	0.994
17.m07044	17.m07533	A7AM03	A7ANN1	KOW motif family protein.	RNA polymerase Rpb4 family protein.	0.999
17.m07044	17.m07541	A7AM03	A7ANN8	KOW motif family protein.	mRNA capping enzyme, C-terminal domain containing protein.	0.996
17.m07044	17.m07565	A7AM03	A7ANR2	KOW motif family protein.	mRNA capping enzyme, large subunit family protein.	0.991
17.m07044	17.m07603	A7AM03	A7ANV8	KOW motif family protein.	Cyclin N-terminal domain-containing protein.	0.863
17.m07044	17.m07695	A7AM03	A7AP69	KOW motif family protein.	BSD domain-containing protein.	0.862
17.m07044	17.m07800	A7AM03	A7API8	KOW motif family protein.	Uncharacterized protein.	0.798
17.m07044	17.m07860	A7AM03	A7APR4	KOW motif family protein.	RNA polymerase Rpb5, N-terminal domain containing protein.	0.999
17.m07044	17.m07871	A7AM03	A7APS5	KOW motif family protein.	DNA repair helicase rad25 family protein.	0.766
17.m07044	18.m06094	A7AM03	A7AT24	KOW motif family protein.	DNA-directed RNA polymerase subunit I, putative.	0.999
17.m07044	18.m06162	A7AM03	A7ATA0	KOW motif family protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.895
17.m07044	18.m06472	A7AM03	A7AUA8	KOW motif family protein.	MAT1 domain-containing protein.	0.816
17.m07044	18.m06627	A7AM03	A7AUU3	KOW motif family protein.	DNA-directed RNA polymerase 2 subunit, putative; Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.	0.998
17.m07044	19.m02023	A7AM03	A7AWB4	KOW motif family protein.	DNA-directed RNA polymerase II, putative.	0.999
17.m07044	19.m02399	A7AM03	A7AWJ0	KOW motif family protein.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.934
17.m07044	21.m02816	A7AM03	A7AVF2	KOW motif family protein.	Transcriptional factor 2 subunit.	0.763
17.m07044	21.m02831	A7AM03	A7AVA1	KOW motif family protein.	DNA excision repair helicase.	0.763
17.m07044	21.m02970	A7AM03	A7AVX2	KOW motif family protein.	Uncharacterized protein.	0.832