(7 nodes) mRNA polyadenylation, and Zinc finger, CCHC-type network (Theileria annulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA08230	Symplekin_C domain-containing protein. (1337 aa)
	TA05230	Cleavage and polyadenylation specificty factor, subunit, putative. (1282 aa)
	TA11620	Cleavage and polyadenylation specificity factor subunit 2. (830 aa)
	TA12675	Uncharacterized protein. (430 aa)
	TA14900	CPSF (Cleavage and polyadenylation specific factor), subunit A, putative. (1641 aa)
	TA19770	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's. (512 aa)
	TA16630	WD_REPEATS_REGION domain-containing protein. (341 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TA05230	TA08230	Q4UBM2	Q4U9R5	Cleavage and polyadenylation specificty factor, subunit, putative.	Symplekin_C domain-containing protein.	0.999
TA05230	TA11620	Q4UBM2	Q4UDL0	Cleavage and polyadenylation specificty factor, subunit, putative.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
TA05230	TA12675	Q4UBM2	Q4UE51	Cleavage and polyadenylation specificty factor, subunit, putative.	Uncharacterized protein.	0.999
TA05230	TA14900	Q4UBM2	Q4UFA2	Cleavage and polyadenylation specificty factor, subunit, putative.	CPSF (Cleavage and polyadenylation specific factor), subunit A, putative.	0.999
TA05230	TA16630	Q4UBM2	Q4UIH8	Cleavage and polyadenylation specificty factor, subunit, putative.	WD_REPEATS_REGION domain-containing protein.	0.999
TA05230	TA19770	Q4UBM2	Q4UG00	Cleavage and polyadenylation specificty factor, subunit, putative.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.998
TA08230	TA05230	Q4U9R5	Q4UBM2	Symplekin_C domain-containing protein.	Cleavage and polyadenylation specificty factor, subunit, putative.	0.999
TA08230	TA11620	Q4U9R5	Q4UDL0	Symplekin_C domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
TA08230	TA12675	Q4U9R5	Q4UE51	Symplekin_C domain-containing protein.	Uncharacterized protein.	0.992
TA08230	TA14900	Q4U9R5	Q4UFA2	Symplekin_C domain-containing protein.	CPSF (Cleavage and polyadenylation specific factor), subunit A, putative.	0.999
TA08230	TA16630	Q4U9R5	Q4UIH8	Symplekin_C domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.997
TA08230	TA19770	Q4U9R5	Q4UG00	Symplekin_C domain-containing protein.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.998
TA11620	TA05230	Q4UDL0	Q4UBM2	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specificty factor, subunit, putative.	0.999
TA11620	TA08230	Q4UDL0	Q4U9R5	Cleavage and polyadenylation specificity factor subunit 2.	Symplekin_C domain-containing protein.	0.999
TA11620	TA12675	Q4UDL0	Q4UE51	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.999
TA11620	TA14900	Q4UDL0	Q4UFA2	Cleavage and polyadenylation specificity factor subunit 2.	CPSF (Cleavage and polyadenylation specific factor), subunit A, putative.	0.999
TA11620	TA16630	Q4UDL0	Q4UIH8	Cleavage and polyadenylation specificity factor subunit 2.	WD_REPEATS_REGION domain-containing protein.	0.999
TA11620	TA19770	Q4UDL0	Q4UG00	Cleavage and polyadenylation specificity factor subunit 2.	Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.	0.999
TA12675	TA05230	Q4UE51	Q4UBM2	Uncharacterized protein.	Cleavage and polyadenylation specificty factor, subunit, putative.	0.999
TA12675	TA08230	Q4UE51	Q4U9R5	Uncharacterized protein.	Symplekin_C domain-containing protein.	0.992