13 items (Theileria annulata) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA10195	DNA-directed RNA polymerase, subunit (RPB5 homologue), putative. (205 aa)
	TA07800	Transcription modulator, putative. (1026 aa)
	TA07735	CDC73_C domain-containing protein. (406 aa)
	TA09185	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...] (490 aa)
	TA18410	Transcription factor, putative. (926 aa)
	TA17710	Uncharacterized protein. (449 aa)
	TA02635	DNA-directed RNA polymerase II, putative. (124 aa)
	TA12735	RNA polymerase 16kd subunit, RPB4-like, putative. (130 aa)
	TA19735	DNA-directed RNA polymerase ii, putative. (354 aa)
	TA19875	Uncharacterized protein. (1064 aa)
	TA19500	DNA-directed RNA polymerase ii, putative. (175 aa)
	TA19535	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	TA20345	Possible transcription initiation protein spt4-like, putatve. (230 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TA02635	TA07735	Q4UD30	Q4UA04	DNA-directed RNA polymerase II, putative.	CDC73_C domain-containing protein.	0.932
TA02635	TA07800	Q4UD30	Q4U9Z4	DNA-directed RNA polymerase II, putative.	Transcription modulator, putative.	0.934
TA02635	TA09185	Q4UD30	Q4UAH0	DNA-directed RNA polymerase II, putative.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.942
TA02635	TA10195	Q4UD30	Q4U8E3	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase, subunit (RPB5 homologue), putative.	0.999
TA02635	TA12735	Q4UD30	Q4UE61	DNA-directed RNA polymerase II, putative.	RNA polymerase 16kd subunit, RPB4-like, putative.	0.999
TA02635	TA17710	Q4UD30	Q4UBA0	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.851
TA02635	TA18410	Q4UD30	Q4UAX3	DNA-directed RNA polymerase II, putative.	Transcription factor, putative.	0.998
TA02635	TA19500	Q4UD30	Q4UGG7	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase ii, putative.	0.999
TA02635	TA19535	Q4UD30	Q4UGH4	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999
TA02635	TA19735	Q4UD30	Q4UFZ3	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase ii, putative.	0.999
TA02635	TA19875	Q4UD30	Q4UG20	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.908
TA02635	TA20345	Q4UD30	Q4UH88	DNA-directed RNA polymerase II, putative.	Possible transcription initiation protein spt4-like, putatve.	0.998
TA07735	TA02635	Q4UA04	Q4UD30	CDC73_C domain-containing protein.	DNA-directed RNA polymerase II, putative.	0.932
TA07735	TA07800	Q4UA04	Q4U9Z4	CDC73_C domain-containing protein.	Transcription modulator, putative.	0.999
TA07735	TA09185	Q4UA04	Q4UAH0	CDC73_C domain-containing protein.	FACT complex subunit SSRP1; Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment o [...]	0.998
TA07735	TA10195	Q4UA04	Q4U8E3	CDC73_C domain-containing protein.	DNA-directed RNA polymerase, subunit (RPB5 homologue), putative.	0.936
TA07735	TA12735	Q4UA04	Q4UE61	CDC73_C domain-containing protein.	RNA polymerase 16kd subunit, RPB4-like, putative.	0.914
TA07735	TA17710	Q4UA04	Q4UBA0	CDC73_C domain-containing protein.	Uncharacterized protein.	0.999
TA07735	TA18410	Q4UA04	Q4UAX3	CDC73_C domain-containing protein.	Transcription factor, putative.	0.980
TA07735	TA19500	Q4UA04	Q4UGG7	CDC73_C domain-containing protein.	DNA-directed RNA polymerase ii, putative.	0.936