(5 nodes) tRNA surveillance network (Theileria annulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA10935	Uncharacterized protein. (378 aa)
	TA02595	Uncharacterized protein. (162 aa)
	TA14785	ECR1_N domain-containing protein. (293 aa)
	TA21305	3'-5' exoribonuclease (CSL4 homologue), putative. (180 aa)
	TA06285	Exosome ribonuclease PH (Rrp42 homologue), putative. (268 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TA02595	TA06285	Q4UD22	Q4UI91	Uncharacterized protein.	Exosome ribonuclease PH (Rrp42 homologue), putative.	0.999
TA02595	TA10935	Q4UD22	Q4U981	Uncharacterized protein.	Uncharacterized protein.	0.999
TA02595	TA14785	Q4UD22	Q4UDE6	Uncharacterized protein.	ECR1_N domain-containing protein.	0.999
TA02595	TA21305	Q4UD22	Q4UGP6	Uncharacterized protein.	3'-5' exoribonuclease (CSL4 homologue), putative.	0.999
TA06285	TA02595	Q4UI91	Q4UD22	Exosome ribonuclease PH (Rrp42 homologue), putative.	Uncharacterized protein.	0.999
TA06285	TA10935	Q4UI91	Q4U981	Exosome ribonuclease PH (Rrp42 homologue), putative.	Uncharacterized protein.	0.999
TA06285	TA14785	Q4UI91	Q4UDE6	Exosome ribonuclease PH (Rrp42 homologue), putative.	ECR1_N domain-containing protein.	0.999
TA06285	TA21305	Q4UI91	Q4UGP6	Exosome ribonuclease PH (Rrp42 homologue), putative.	3'-5' exoribonuclease (CSL4 homologue), putative.	0.999
TA10935	TA02595	Q4U981	Q4UD22	Uncharacterized protein.	Uncharacterized protein.	0.999
TA10935	TA06285	Q4U981	Q4UI91	Uncharacterized protein.	Exosome ribonuclease PH (Rrp42 homologue), putative.	0.999
TA10935	TA14785	Q4U981	Q4UDE6	Uncharacterized protein.	ECR1_N domain-containing protein.	0.999
TA10935	TA21305	Q4U981	Q4UGP6	Uncharacterized protein.	3'-5' exoribonuclease (CSL4 homologue), putative.	0.999
TA14785	TA02595	Q4UDE6	Q4UD22	ECR1_N domain-containing protein.	Uncharacterized protein.	0.999
TA14785	TA06285	Q4UDE6	Q4UI91	ECR1_N domain-containing protein.	Exosome ribonuclease PH (Rrp42 homologue), putative.	0.999
TA14785	TA10935	Q4UDE6	Q4U981	ECR1_N domain-containing protein.	Uncharacterized protein.	0.999
TA14785	TA21305	Q4UDE6	Q4UGP6	ECR1_N domain-containing protein.	3'-5' exoribonuclease (CSL4 homologue), putative.	0.999
TA21305	TA02595	Q4UGP6	Q4UD22	3'-5' exoribonuclease (CSL4 homologue), putative.	Uncharacterized protein.	0.999
TA21305	TA06285	Q4UGP6	Q4UI91	3'-5' exoribonuclease (CSL4 homologue), putative.	Exosome ribonuclease PH (Rrp42 homologue), putative.	0.999
TA21305	TA10935	Q4UGP6	Q4U981	3'-5' exoribonuclease (CSL4 homologue), putative.	Uncharacterized protein.	0.999
TA21305	TA14785	Q4UGP6	Q4UDE6	3'-5' exoribonuclease (CSL4 homologue), putative.	ECR1_N domain-containing protein.	0.999