(14 nodes) snRNA metabolic process network (Theileria annulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA06325	Exosome complex exonuclease (Rrp46 homologue), putative. (265 aa)
	TA10935	Uncharacterized protein. (378 aa)
	TA04265	3'-5' exonuclease, putative. (790 aa)
	TA05480	Uncharacterized protein. (663 aa)
	TA02595	Uncharacterized protein. (162 aa)
	TA14510	Uncharacterized protein. (478 aa)
	TA14785	ECR1_N domain-containing protein. (293 aa)
	TA19335	Exosome complex exonuclease, putative. (322 aa)
	TA20905	Exosome complex exonuclease rrp41, putative. (245 aa)
	TA20665	Uncharacterized protein. (281 aa)
	TA03070	Uncharacterized protein. (580 aa)
	TA02850	Nucleolar protein (Nop10 homologue), putative. (58 aa)
	TA06285	Exosome ribonuclease PH (Rrp42 homologue), putative. (268 aa)
	TA17030	3' exonuclease, exosome component, putative. (254 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TA02595	TA04265	Q4UD22	Q4UC54	Uncharacterized protein.	3'-5' exonuclease, putative.	0.999
TA02595	TA06285	Q4UD22	Q4UI91	Uncharacterized protein.	Exosome ribonuclease PH (Rrp42 homologue), putative.	0.999
TA02595	TA06325	Q4UD22	Q4UI98	Uncharacterized protein.	Exosome complex exonuclease (Rrp46 homologue), putative.	0.999
TA02595	TA10935	Q4UD22	Q4U981	Uncharacterized protein.	Uncharacterized protein.	0.999
TA02595	TA14785	Q4UD22	Q4UDE6	Uncharacterized protein.	ECR1_N domain-containing protein.	0.999
TA02595	TA17030	Q4UD22	Q4UIP4	Uncharacterized protein.	3' exonuclease, exosome component, putative.	0.968
TA02595	TA19335	Q4UD22	Q4UFY0	Uncharacterized protein.	Exosome complex exonuclease, putative.	0.999
TA02595	TA20905	Q4UD22	Q4UGX4	Uncharacterized protein.	Exosome complex exonuclease rrp41, putative.	0.968
TA03070	TA05480	Q4UHG1	Q4UCQ8	Uncharacterized protein.	Uncharacterized protein.	0.999
TA04265	TA02595	Q4UC54	Q4UD22	3'-5' exonuclease, putative.	Uncharacterized protein.	0.999
TA04265	TA06285	Q4UC54	Q4UI91	3'-5' exonuclease, putative.	Exosome ribonuclease PH (Rrp42 homologue), putative.	0.999
TA04265	TA06325	Q4UC54	Q4UI98	3'-5' exonuclease, putative.	Exosome complex exonuclease (Rrp46 homologue), putative.	0.999
TA04265	TA10935	Q4UC54	Q4U981	3'-5' exonuclease, putative.	Uncharacterized protein.	0.999
TA04265	TA14785	Q4UC54	Q4UDE6	3'-5' exonuclease, putative.	ECR1_N domain-containing protein.	0.999
TA04265	TA17030	Q4UC54	Q4UIP4	3'-5' exonuclease, putative.	3' exonuclease, exosome component, putative.	0.959
TA04265	TA19335	Q4UC54	Q4UFY0	3'-5' exonuclease, putative.	Exosome complex exonuclease, putative.	0.999
TA04265	TA20905	Q4UC54	Q4UGX4	3'-5' exonuclease, putative.	Exosome complex exonuclease rrp41, putative.	0.959
TA05480	TA03070	Q4UCQ8	Q4UHG1	Uncharacterized protein.	Uncharacterized protein.	0.999
TA06285	TA02595	Q4UI91	Q4UD22	Exosome ribonuclease PH (Rrp42 homologue), putative.	Uncharacterized protein.	0.999
TA06285	TA04265	Q4UI91	Q4UC54	Exosome ribonuclease PH (Rrp42 homologue), putative.	3'-5' exonuclease, putative.	0.999