(15 nodes) mRNA transport network (Theileria annulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA20795	MIF4G_like_2 domain-containing protein. (971 aa)
	TA10145	Uncharacterized protein. (1316 aa)
	TA10560	WD_REPEATS_REGION domain-containing protein. (407 aa)
	TA08190	SLBP_RNA_bind domain-containing protein. (177 aa)
	TA07365	TFIIS N-terminal domain-containing protein. (335 aa)
	TA18815	RNA-binding protein, putative. (98 aa)
	TA04190	DEAD-box family helicase, putative. (451 aa)
	TA05505	SAP domain-containing protein. (248 aa)
	TA02565	Transport protein (SEC13 homologue), putative; Belongs to the WD repeat SEC13 family. (318 aa)
	TA12750	SLBP_RNA_bind domain-containing protein. (380 aa)
	TA14065	RNA and export factor binding protein, putative. (188 aa)
	TA12730	Uncharacterized protein. (251 aa)
	TA12735	RNA polymerase 16kd subunit, RPB4-like, putative. (130 aa)
	TA19860	DEAD box RNA helicase, putative; Belongs to the DEAD box helicase family. (501 aa)
	TA19055	SONA homologue, putative. (346 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TA02565	TA04190	Q4UD16	Q4UC68	Transport protein (SEC13 homologue), putative; Belongs to the WD repeat SEC13 family.	DEAD-box family helicase, putative.	0.541
TA02565	TA08190	Q4UD16	Q4U9S2	Transport protein (SEC13 homologue), putative; Belongs to the WD repeat SEC13 family.	SLBP_RNA_bind domain-containing protein.	0.548
TA02565	TA12750	Q4UD16	Q4UDA9	Transport protein (SEC13 homologue), putative; Belongs to the WD repeat SEC13 family.	SLBP_RNA_bind domain-containing protein.	0.548
TA02565	TA19055	Q4UD16	Q4UG91	Transport protein (SEC13 homologue), putative; Belongs to the WD repeat SEC13 family.	SONA homologue, putative.	0.868
TA04190	TA02565	Q4UC68	Q4UD16	DEAD-box family helicase, putative.	Transport protein (SEC13 homologue), putative; Belongs to the WD repeat SEC13 family.	0.541
TA04190	TA05505	Q4UC68	Q4UCQ3	DEAD-box family helicase, putative.	SAP domain-containing protein.	0.988
TA04190	TA10145	Q4UC68	Q4U8T7	DEAD-box family helicase, putative.	Uncharacterized protein.	0.705
TA04190	TA10560	Q4UC68	Q4U912	DEAD-box family helicase, putative.	WD_REPEATS_REGION domain-containing protein.	0.951
TA04190	TA12730	Q4UC68	Q4UE60	DEAD-box family helicase, putative.	Uncharacterized protein.	0.593
TA04190	TA14065	Q4UC68	Q4UDD2	DEAD-box family helicase, putative.	RNA and export factor binding protein, putative.	0.999
TA04190	TA18815	Q4UC68	Q4UBC5	DEAD-box family helicase, putative.	RNA-binding protein, putative.	0.966
TA04190	TA19055	Q4UC68	Q4UG91	DEAD-box family helicase, putative.	SONA homologue, putative.	0.866
TA04190	TA19860	Q4UC68	Q4UG17	DEAD-box family helicase, putative.	DEAD box RNA helicase, putative; Belongs to the DEAD box helicase family.	0.505
TA04190	TA20795	Q4UC68	Q4UGZ6	DEAD-box family helicase, putative.	MIF4G_like_2 domain-containing protein.	0.903
TA05505	TA04190	Q4UCQ3	Q4UC68	SAP domain-containing protein.	DEAD-box family helicase, putative.	0.988
TA05505	TA10145	Q4UCQ3	Q4U8T7	SAP domain-containing protein.	Uncharacterized protein.	0.468
TA05505	TA10560	Q4UCQ3	Q4U912	SAP domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.848
TA05505	TA14065	Q4UCQ3	Q4UDD2	SAP domain-containing protein.	RNA and export factor binding protein, putative.	0.997
TA05505	TA18815	Q4UCQ3	Q4UBC5	SAP domain-containing protein.	RNA-binding protein, putative.	0.712
TA05505	TA19055	Q4UCQ3	Q4UG91	SAP domain-containing protein.	SONA homologue, putative.	0.576