(16 nodes) RNA phosphodiester bond hydrolysis, exonucleolytic network (Theileria annulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA19335	Exosome complex exonuclease, putative. (322 aa)
	TA05935	5'-3' exoribonuclease (XRN2, DHM1 homologue), putative. (619 aa)
	TA20575	Enzyme, putative. (693 aa)
	TA20585	Exosome complex exonuclease rrp44, putative; Belongs to the RNR ribonuclease family. (955 aa)
	TA20665	Uncharacterized protein. (281 aa)
	TA20915	Possible ribonuclease ii family protein. (1062 aa)
	TA13280	Exonuclease, putative. (1120 aa)
	TA12335	Endo/exonuclease/phosphatase domain-containing protein. (707 aa)
	TA11675	5'-3' exoribonuclease 2, putative. (1467 aa)
	TA14785	ECR1_N domain-containing protein. (293 aa)
	TA02595	Uncharacterized protein. (162 aa)
	TA04265	3'-5' exonuclease, putative. (790 aa)
	TA08085	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (937 aa)
	TA11030	mRNA turnover/deadenylation component (POP2 homologue), putative. (544 aa)
	TA10935	Uncharacterized protein. (378 aa)
	TA06285	Exosome ribonuclease PH (Rrp42 homologue), putative. (268 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TA02595	TA04265	Q4UD22	Q4UC54	Uncharacterized protein.	3'-5' exonuclease, putative.	0.999
TA02595	TA05935	Q4UD22	Q4UI27	Uncharacterized protein.	5'-3' exoribonuclease (XRN2, DHM1 homologue), putative.	0.701
TA02595	TA06285	Q4UD22	Q4UI91	Uncharacterized protein.	Exosome ribonuclease PH (Rrp42 homologue), putative.	0.999
TA02595	TA10935	Q4UD22	Q4U981	Uncharacterized protein.	Uncharacterized protein.	0.999
TA02595	TA11675	Q4UD22	Q4UDL9	Uncharacterized protein.	5'-3' exoribonuclease 2, putative.	0.701
TA02595	TA14785	Q4UD22	Q4UDE6	Uncharacterized protein.	ECR1_N domain-containing protein.	0.999
TA02595	TA19335	Q4UD22	Q4UFY0	Uncharacterized protein.	Exosome complex exonuclease, putative.	0.999
TA02595	TA20585	Q4UD22	Q4UH40	Uncharacterized protein.	Exosome complex exonuclease rrp44, putative; Belongs to the RNR ribonuclease family.	0.956
TA02595	TA20915	Q4UD22	Q4UGX2	Uncharacterized protein.	Possible ribonuclease ii family protein.	0.956
TA04265	TA02595	Q4UC54	Q4UD22	3'-5' exonuclease, putative.	Uncharacterized protein.	0.999
TA04265	TA05935	Q4UC54	Q4UI27	3'-5' exonuclease, putative.	5'-3' exoribonuclease (XRN2, DHM1 homologue), putative.	0.482
TA04265	TA06285	Q4UC54	Q4UI91	3'-5' exonuclease, putative.	Exosome ribonuclease PH (Rrp42 homologue), putative.	0.999
TA04265	TA08085	Q4UC54	Q4U9U2	3'-5' exonuclease, putative.	5'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II.	0.718
TA04265	TA10935	Q4UC54	Q4U981	3'-5' exonuclease, putative.	Uncharacterized protein.	0.999
TA04265	TA11675	Q4UC54	Q4UDL9	3'-5' exonuclease, putative.	5'-3' exoribonuclease 2, putative.	0.482
TA04265	TA13280	Q4UC54	Q4UEG0	3'-5' exonuclease, putative.	Exonuclease, putative.	0.864
TA04265	TA14785	Q4UC54	Q4UDE6	3'-5' exonuclease, putative.	ECR1_N domain-containing protein.	0.999
TA04265	TA19335	Q4UC54	Q4UFY0	3'-5' exonuclease, putative.	Exosome complex exonuclease, putative.	0.999
TA04265	TA20585	Q4UC54	Q4UH40	3'-5' exonuclease, putative.	Exosome complex exonuclease rrp44, putative; Belongs to the RNR ribonuclease family.	0.956
TA04265	TA20915	Q4UC54	Q4UGX2	3'-5' exonuclease, putative.	Possible ribonuclease ii family protein.	0.956