(6 nodes) mRNA cleavage and polyadenylation specificity factor complex network (Theileria annulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA09040	Uncharacterized protein. (330 aa)
	TA08230	Symplekin_C domain-containing protein. (1337 aa)
	TA05230	Cleavage and polyadenylation specificty factor, subunit, putative. (1282 aa)
	TA05480	Uncharacterized protein. (663 aa)
	TA11620	Cleavage and polyadenylation specificity factor subunit 2. (830 aa)
	TA16450	Eukaryotic translation initiation factor eIF2A/WD domain, G-beta repeat, putative. (449 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TA05230	TA08230	Q4UBM2	Q4U9R5	Cleavage and polyadenylation specificty factor, subunit, putative.	Symplekin_C domain-containing protein.	0.999
TA05230	TA09040	Q4UBM2	Q4U9B8	Cleavage and polyadenylation specificty factor, subunit, putative.	Uncharacterized protein.	0.989
TA05230	TA11620	Q4UBM2	Q4UDL0	Cleavage and polyadenylation specificty factor, subunit, putative.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
TA05230	TA16450	Q4UBM2	Q4UIW6	Cleavage and polyadenylation specificty factor, subunit, putative.	Eukaryotic translation initiation factor eIF2A/WD domain, G-beta repeat, putative.	0.999
TA05480	TA08230	Q4UCQ8	Q4U9R5	Uncharacterized protein.	Symplekin_C domain-containing protein.	0.933
TA05480	TA09040	Q4UCQ8	Q4U9B8	Uncharacterized protein.	Uncharacterized protein.	0.820
TA05480	TA11620	Q4UCQ8	Q4UDL0	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.986
TA05480	TA16450	Q4UCQ8	Q4UIW6	Uncharacterized protein.	Eukaryotic translation initiation factor eIF2A/WD domain, G-beta repeat, putative.	0.701
TA08230	TA05230	Q4U9R5	Q4UBM2	Symplekin_C domain-containing protein.	Cleavage and polyadenylation specificty factor, subunit, putative.	0.999
TA08230	TA05480	Q4U9R5	Q4UCQ8	Symplekin_C domain-containing protein.	Uncharacterized protein.	0.933
TA08230	TA09040	Q4U9R5	Q4U9B8	Symplekin_C domain-containing protein.	Uncharacterized protein.	0.990
TA08230	TA11620	Q4U9R5	Q4UDL0	Symplekin_C domain-containing protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.999
TA08230	TA16450	Q4U9R5	Q4UIW6	Symplekin_C domain-containing protein.	Eukaryotic translation initiation factor eIF2A/WD domain, G-beta repeat, putative.	0.999
TA09040	TA05230	Q4U9B8	Q4UBM2	Uncharacterized protein.	Cleavage and polyadenylation specificty factor, subunit, putative.	0.989
TA09040	TA05480	Q4U9B8	Q4UCQ8	Uncharacterized protein.	Uncharacterized protein.	0.820
TA09040	TA08230	Q4U9B8	Q4U9R5	Uncharacterized protein.	Symplekin_C domain-containing protein.	0.990
TA09040	TA11620	Q4U9B8	Q4UDL0	Uncharacterized protein.	Cleavage and polyadenylation specificity factor subunit 2.	0.984
TA09040	TA16450	Q4U9B8	Q4UIW6	Uncharacterized protein.	Eukaryotic translation initiation factor eIF2A/WD domain, G-beta repeat, putative.	0.964
TA11620	TA05230	Q4UDL0	Q4UBM2	Cleavage and polyadenylation specificity factor subunit 2.	Cleavage and polyadenylation specificty factor, subunit, putative.	0.999
TA11620	TA05480	Q4UDL0	Q4UCQ8	Cleavage and polyadenylation specificity factor subunit 2.	Uncharacterized protein.	0.986