(34 nodes) Deadenylation-dependent mRNA decay network (Theileria annulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA10140	Uncharacterized protein. (332 aa)
	TA10935	Uncharacterized protein. (378 aa)
	TA11030	mRNA turnover/deadenylation component (POP2 homologue), putative. (544 aa)
	TA08225	NOT2 / NOT3 / NOT5 family, putative. (273 aa)
	TA08050	DEAD-family helicase, putative. (1069 aa)
	TA07745	U6 snRNP protein Lsm2, putative. (112 aa)
	TA07510	Uncharacterized protein. (231 aa)
	TA07060	NTP_transf_2 domain-containing protein. (475 aa)
	TA17980	U6 snrna-associated sm-like protein, putative. (87 aa)
	LSM4	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (105 aa)
	TA03345	NTP_transf_2 domain-containing protein. (501 aa)
	TA03190	NOT2_3_5 domain-containing protein. (181 aa)
	TA02540	Nudix hydrolase domain-containing protein. (341 aa)
	TA02595	Uncharacterized protein. (162 aa)
	TA14785	ECR1_N domain-containing protein. (293 aa)
	LSM3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA. (94 aa)
	TA13280	Exonuclease, putative. (1120 aa)
	TA13310	Cell differentiation protein (RCD1 homologue), putative. (327 aa)
	TA13555	Uncharacterized protein. (2471 aa)
	TA14185	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family. (416 aa)
	TA14515	R3H domain-containing protein. (623 aa)
	TA19335	Exosome complex exonuclease, putative. (322 aa)
	TA21305	3'-5' exoribonuclease (CSL4 homologue), putative. (180 aa)
	TA21145	Genomic DNA chromosome 1 part 1. (516 aa)
	TA20915	Possible ribonuclease ii family protein. (1062 aa)
	TA20905	Exosome complex exonuclease rrp41, putative. (245 aa)
	TA20585	Exosome complex exonuclease rrp44, putative; Belongs to the RNR ribonuclease family. (955 aa)
	LSM5	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA. (90 aa)
	TA06285	Exosome ribonuclease PH (Rrp42 homologue), putative. (268 aa)
	TA06325	Exosome complex exonuclease (Rrp46 homologue), putative. (265 aa)
	LSM1	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs. (161 aa)
	TA16725	U6 snRNA-associated Sm-lke protein, putative. (76 aa)
	TA17030	3' exonuclease, exosome component, putative. (254 aa)
	TA17090	Uncharacterized protein. (1764 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LSM1	LSM3	Q4UID3	Q4UDG7	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM1	LSM4	Q4UID3	Q4UBR6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM1	LSM5	Q4UID3	Q4UHZ4	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM1	TA02540	Q4UID3	Q4UD11	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Nudix hydrolase domain-containing protein.	0.947
LSM1	TA07745	Q4UID3	Q4UA02	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNP protein Lsm2, putative.	0.999
LSM1	TA08050	Q4UID3	Q4U9U7	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	DEAD-family helicase, putative.	0.637
LSM1	TA10140	Q4UID3	Q4U8T6	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Uncharacterized protein.	0.901
LSM1	TA11030	Q4UID3	Q4U997	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	mRNA turnover/deadenylation component (POP2 homologue), putative.	0.402
LSM1	TA13280	Q4UID3	Q4UEG0	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	Exonuclease, putative.	0.419
LSM1	TA14185	Q4UID3	Q4UEX3	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.999
LSM1	TA16725	Q4UID3	Q4UII3	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snRNA-associated Sm-lke protein, putative.	0.999
LSM1	TA17980	Q4UID3	Q4UB53	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	U6 snrna-associated sm-like protein, putative.	0.999
LSM3	LSM1	Q4UDG7	Q4UID3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.999
LSM3	LSM4	Q4UDG7	Q4UBR6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm4; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	0.999
LSM3	LSM5	Q4UDG7	Q4UHZ4	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-like protein LSm5; Plays a role in U6 snRNP assembly and function. Binds to the 3' end of U6 snRNA.	0.999
LSM3	TA02540	Q4UDG7	Q4UD11	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Nudix hydrolase domain-containing protein.	0.913
LSM3	TA07745	Q4UDG7	Q4UA02	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNP protein Lsm2, putative.	0.999
LSM3	TA10140	Q4UDG7	Q4U8T6	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	Uncharacterized protein.	0.827
LSM3	TA14185	Q4UDG7	Q4UEX3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	ATP-dependent RNA helicase, putative; Belongs to the DEAD box helicase family.	0.871
LSM3	TA16725	Q4UDG7	Q4UII3	U6 snRNA-associated Sm-like protein LSm3; Binds specifically to the 3'-terminal U-tract of U6 snRNA.	U6 snRNA-associated Sm-lke protein, putative.	0.999