(35 nodes) Transcription-Coupled Nucleotide Excision Repair (TC-NER) network (Theileria annulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA19595	Damage-specific DNA binding protein 1, putative. (1501 aa)
	TA21175	Rna-binding protein, putative. (84 aa)
	TA10195	DNA-directed RNA polymerase, subunit (RPB5 homologue), putative. (205 aa)
	TA11370	Uncharacterized protein. (391 aa)
	TA10125	Uncharacterized protein. (630 aa)
	TA10160	S27 ribosomal protein, putative. (162 aa)
	TA10435	BSD domain-containing protein. (612 aa)
	TA11045	Cyclin, putative; Belongs to the cyclin family. (319 aa)
	TA08900	Endonuclease (Xp-g/RAD2 homologue), putative. (899 aa)
	TA08570	RNA polymerase common subunit (Rpb6 homologue), putative. (153 aa)
	TA08125	CBFD_NFYB_HMF domain-containing protein. (182 aa)
	TA07925	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1223 aa)
	TA17205	DNA repair helicase, putative. (965 aa)
	TA04780	C2H2-type domain-containing protein. (319 aa)
	TA03395	Uncharacterized protein. (527 aa)
	TA20305	Transcription elongation factor, putative. (418 aa)
	TA03235	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1678 aa)
	TA05355	Uncharacterized protein. (1747 aa)
	TA05285	TFIIS central domain-containing protein. (333 aa)
	TA04975	Transcription factor TFIIH complex subunit Tfb5, putative. (71 aa)
	TA02635	DNA-directed RNA polymerase II, putative. (124 aa)
	TA02675	PUB domain-containing protein. (468 aa)
	TA15495	Replication protein A subunit. (625 aa)
	TA11585	DNA repair helicase, putative. (770 aa)
	TA11880	DNA-directed RNA polymerase 2 subunit, putative. (167 aa)
	TA12735	RNA polymerase 16kd subunit, RPB4-like, putative. (130 aa)
	TA13200	Replication factor A-related protein, putative. (466 aa)
	TA13640	CDK-activating kinase assembly factor, putative. (236 aa)
	TA15100	Isy1-like splicing family, putative. (194 aa)
	TA19735	DNA-directed RNA polymerase ii, putative. (354 aa)
	TA20005	Rna-processing protein, putative. (826 aa)
	TA16710	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (645 aa)
	TA19155	Rad3-like DNA helicase-related, putative. (894 aa)
	TA19500	DNA-directed RNA polymerase ii, putative. (175 aa)
	TA19535	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TA02635	TA02675	Q4UD30	Q4UD38	DNA-directed RNA polymerase II, putative.	PUB domain-containing protein.	0.999
TA02635	TA03235	Q4UD30	Q4UCP5	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.929
TA02635	TA03395	Q4UD30	Q4UCL6	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.468
TA02635	TA04780	Q4UD30	Q4UBV2	DNA-directed RNA polymerase II, putative.	C2H2-type domain-containing protein.	0.977
TA02635	TA05285	Q4UD30	Q4UCU7	DNA-directed RNA polymerase II, putative.	TFIIS central domain-containing protein.	0.735
TA02635	TA07925	Q4UD30	Q4U9X1	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
TA02635	TA08570	Q4UD30	Q4U9K3	DNA-directed RNA polymerase II, putative.	RNA polymerase common subunit (Rpb6 homologue), putative.	0.999
TA02635	TA10125	Q4UD30	Q4U8T3	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.863
TA02635	TA10160	Q4UD30	Q4U8U0	DNA-directed RNA polymerase II, putative.	S27 ribosomal protein, putative.	0.686
TA02635	TA10195	Q4UD30	Q4U8E3	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase, subunit (RPB5 homologue), putative.	0.999
TA02635	TA10435	Q4UD30	Q4U8Y9	DNA-directed RNA polymerase II, putative.	BSD domain-containing protein.	0.971
TA02635	TA11045	Q4UD30	Q4U9A0	DNA-directed RNA polymerase II, putative.	Cyclin, putative; Belongs to the cyclin family.	0.904
TA02635	TA11370	Q4UD30	Q4U8M4	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.971
TA02635	TA11585	Q4UD30	Q4UDK4	DNA-directed RNA polymerase II, putative.	DNA repair helicase, putative.	0.977
TA02635	TA11880	Q4UD30	Q4UDQ7	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase 2 subunit, putative.	0.999
TA02635	TA12735	Q4UD30	Q4UE61	DNA-directed RNA polymerase II, putative.	RNA polymerase 16kd subunit, RPB4-like, putative.	0.999
TA02635	TA13640	Q4UD30	Q4UEM5	DNA-directed RNA polymerase II, putative.	CDK-activating kinase assembly factor, putative.	0.971
TA02635	TA15100	Q4UD30	Q4UFB6	DNA-directed RNA polymerase II, putative.	Isy1-like splicing family, putative.	0.458
TA02635	TA16710	Q4UD30	Q4UII0	DNA-directed RNA polymerase II, putative.	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family.	0.971
TA02635	TA17205	Q4UD30	Q4UAQ6	DNA-directed RNA polymerase II, putative.	DNA repair helicase, putative.	0.953