(30 nodes) RNA Polymerase II Transcription Initiation And Promoter Clearance network (Theileria annulata)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	TA10195	DNA-directed RNA polymerase, subunit (RPB5 homologue), putative. (205 aa)
	TA11370	Uncharacterized protein. (391 aa)
	TA10435	BSD domain-containing protein. (612 aa)
	TA11045	Cyclin, putative; Belongs to the cyclin family. (319 aa)
	TA08570	RNA polymerase common subunit (Rpb6 homologue), putative. (153 aa)
	TA07925	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1223 aa)
	TA07725	Uncharacterized protein. (112 aa)
	TA07670	WD_REPEATS_REGION domain-containing protein. (776 aa)
	TA17760	TAF domain-containing protein. (648 aa)
	TA04780	C2H2-type domain-containing protein. (319 aa)
	TA03235	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. (1678 aa)
	TA04975	Transcription factor TFIIH complex subunit Tfb5, putative. (71 aa)
	TA02635	DNA-directed RNA polymerase II, putative. (124 aa)
	TA02675	PUB domain-containing protein. (468 aa)
	TA11585	DNA repair helicase, putative. (770 aa)
	TA11860	Transcription initiation factor tfiib, putative. (341 aa)
	TA11880	DNA-directed RNA polymerase 2 subunit, putative. (167 aa)
	TA12735	RNA polymerase 16kd subunit, RPB4-like, putative. (130 aa)
	TA13640	CDK-activating kinase assembly factor, putative. (236 aa)
	TA13780	TAFII55_N domain-containing protein. (383 aa)
	TA14940	Uncharacterized protein. (307 aa)
	TA19735	DNA-directed RNA polymerase ii, putative. (354 aa)
	TA19155	Rad3-like DNA helicase-related, putative. (894 aa)
	TA19500	DNA-directed RNA polymerase ii, putative. (175 aa)
	TA19535	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively. (145 aa)
	TA21225	Bromodomain protein, putative. (1904 aa)
	TA20815	Tata box binding protein, putative. (401 aa)
	TA03075	Transcription initiation factor (TBP homologue), putative. (222 aa)
	TA16710	General transcription factor IIH subunit 4; Component of the general transcription and DNA repair factor IIH (TFIIH) core complex which is involved in general and transcription-coupled nucleotide excision repair (NER) of damaged DNA. Belongs to the TFB2 family. (645 aa)
	TA16170	Transcription factor TFIIE, putative. (398 aa)

Your Current Organism:

Theileria annulata

NCBI taxonomy Id: 5874
Other names: T. annulata

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
TA02635	TA02675	Q4UD30	Q4UD38	DNA-directed RNA polymerase II, putative.	PUB domain-containing protein.	0.999
TA02635	TA03075	Q4UD30	Q4UHG0	DNA-directed RNA polymerase II, putative.	Transcription initiation factor (TBP homologue), putative.	0.915
TA02635	TA03235	Q4UD30	Q4UCP5	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.929
TA02635	TA04780	Q4UD30	Q4UBV2	DNA-directed RNA polymerase II, putative.	C2H2-type domain-containing protein.	0.977
TA02635	TA07670	Q4UD30	Q4UAK8	DNA-directed RNA polymerase II, putative.	WD_REPEATS_REGION domain-containing protein.	0.742
TA02635	TA07725	Q4UD30	Q4UAK7	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.742
TA02635	TA07925	Q4UD30	Q4U9X1	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
TA02635	TA08570	Q4UD30	Q4U9K3	DNA-directed RNA polymerase II, putative.	RNA polymerase common subunit (Rpb6 homologue), putative.	0.999
TA02635	TA10195	Q4UD30	Q4U8E3	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase, subunit (RPB5 homologue), putative.	0.999
TA02635	TA10435	Q4UD30	Q4U8Y9	DNA-directed RNA polymerase II, putative.	BSD domain-containing protein.	0.971
TA02635	TA11045	Q4UD30	Q4U9A0	DNA-directed RNA polymerase II, putative.	Cyclin, putative; Belongs to the cyclin family.	0.904
TA02635	TA11370	Q4UD30	Q4U8M4	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.971
TA02635	TA11585	Q4UD30	Q4UDK4	DNA-directed RNA polymerase II, putative.	DNA repair helicase, putative.	0.977
TA02635	TA11860	Q4UD30	Q4UDQ3	DNA-directed RNA polymerase II, putative.	Transcription initiation factor tfiib, putative.	0.989
TA02635	TA11880	Q4UD30	Q4UDQ7	DNA-directed RNA polymerase II, putative.	DNA-directed RNA polymerase 2 subunit, putative.	0.999
TA02635	TA12735	Q4UD30	Q4UE61	DNA-directed RNA polymerase II, putative.	RNA polymerase 16kd subunit, RPB4-like, putative.	0.999
TA02635	TA13640	Q4UD30	Q4UEM5	DNA-directed RNA polymerase II, putative.	CDK-activating kinase assembly factor, putative.	0.971
TA02635	TA13780	Q4UD30	Q4UEQ1	DNA-directed RNA polymerase II, putative.	TAFII55_N domain-containing protein.	0.840
TA02635	TA14940	Q4UD30	Q4UFB0	DNA-directed RNA polymerase II, putative.	Uncharacterized protein.	0.996
TA02635	TA16170	Q4UD30	Q4UIR5	DNA-directed RNA polymerase II, putative.	Transcription factor TFIIE, putative.	0.976