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AKA26378.1 AKA26378.1 AKA26301.1 AKA26301.1 AKA26300.1 AKA26300.1 AKA26214.1 AKA26214.1 AKA26197.1 AKA26197.1 AKA26191.1 AKA26191.1 AKA26180.1 AKA26180.1 AKA26168.1 AKA26168.1 AKA26109.1 AKA26109.1 AKA26086.1 AKA26086.1 AKA25914.1 AKA25914.1 AKA25852.1 AKA25852.1 rne rne AKA25721.1 AKA25721.1 lexA-2 lexA-2 AKA25534.1 AKA25534.1 csrA-2 csrA-2 AKA25304.1 AKA25304.1 AKA25264.1 AKA25264.1 AKA25226.1 AKA25226.1 AKA25141.1 AKA25141.1 AKA25139.1 AKA25139.1 AKA25115.1 AKA25115.1 AKA25010.1 AKA25010.1 AKA24920.1 AKA24920.1 AKA24895.1 AKA24895.1 AKA24756.1 AKA24756.1 AKA24650.1 AKA24650.1 AKA24603.1 AKA24603.1 eco eco AKA24463.1 AKA24463.1 AKA24331.1 AKA24331.1 AKA24297.1 AKA24297.1 AKA24281.1 AKA24281.1 AKA24250.1 AKA24250.1 AKA24236.1 AKA24236.1 AKA24018.1 AKA24018.1 AKA23973.1 AKA23973.1 AKA23902.1 AKA23902.1 lexA lexA AKA23778.1 AKA23778.1 AKA23761.1 AKA23761.1 AKA23753.1 AKA23753.1 AKA23666.1 AKA23666.1 AKA23494.1 AKA23494.1 AKA23427.1 AKA23427.1 AKA23406.1 AKA23406.1 AKA23387.1 AKA23387.1 AKA23370.1 AKA23370.1 AKA23245.1 AKA23245.1 AKA23199.1 AKA23199.1 AKA23136.1 AKA23136.1 flgM flgM csrA csrA AKA23120.1 AKA23120.1 AKA23097.1 AKA23097.1 AKA23048.1 AKA23048.1 AKA23008.1 AKA23008.1 AKA22799.1 AKA22799.1 iscR iscR AKA22544.1 AKA22544.1 dksA-2 dksA-2 AKA22371.1 AKA22371.1 AKA22329.1 AKA22329.1 rsfS rsfS AKA22212.1 AKA22212.1 nrdR nrdR AKA22123.1 AKA22123.1 AKA22007.1 AKA22007.1 betI betI rppH rppH AKA21676.1 AKA21676.1 AKA21670.1 AKA21670.1 AKA26574.1 AKA26574.1 pnp pnp fur fur AKA26736.1 AKA26736.1 AKA26805.1 AKA26805.1 AKA26857.1 AKA26857.1 AKA26925.1 AKA26925.1 AKA27133.1 AKA27133.1 AKA27346.1 AKA27346.1 AKA27398.1 AKA27398.1 fur-2 fur-2 AKA27537.1 AKA27537.1 AKA26552.1 AKA26552.1 AKA26498.1 AKA26498.1 AKA26465.1 AKA26465.1 AKA26441.1 AKA26441.1 AKA26394.1 AKA26394.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AKA26378.1TIGRFAM: arsC_related: transcriptional regulator, Spx/MgsR family; Pfam: ArsC family; Belongs to the ArsC family. (113 aa)
AKA26301.1Hypothetical protein; Pfam: Caudovirales tail fibre assembly protein. (86 aa)
AKA26300.1Phage tail protein; Pfam: Caudovirales tail fibre assembly protein. (68 aa)
AKA26214.1Pfam: Bacterial transcriptional regulator; TIGRFAM: pcaR_pcaU: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; SMART: helix_turn_helix isocitrate lyase regulation; Pfam: IclR helix-turn-helix domain. (280 aa)
AKA26197.1Pfam: Bacterial regulatory proteins, tetR family; PRINTS: TetR bacterial regulatory protein HTH signature; Pfam: MAATS-type transcriptional repressor, C-terminal region. (210 aa)
AKA26191.1ArsR family transcriptional regulator; SMART: helix_turn_helix, Arsenical Resistance Operon Repressor; Pfam: Helix-turn-helix domain. (104 aa)
AKA26180.1IclR family transcriptional regulator; Pfam: IclR helix-turn-helix domain; SMART: helix_turn_helix isocitrate lyase regulation. (256 aa)
AKA26168.1Iron dicitrate transporter FecR; Pfam: FecR protein. (319 aa)
AKA26109.1Sigma factor AlgU negative regulatory protein; Pfam: Anti sigma-E protein RseA, C-terminal domain; Pfam: Anti sigma-E protein RseA, N-terminal domain. (195 aa)
AKA26086.1Pfam: LysR substrate binding domain; PRINTS: LysR bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory helix-turn-helix protein, lysR family; Belongs to the LysR transcriptional regulatory family. (312 aa)
AKA25914.1SMART: ATPases associated with a variety of cellular activities; Pfam: Flagellar regulatory protein FleQ; Pfam: Sigma-54 interaction domain; PRINTS: FIS bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory protein, Fis family. (491 aa)
AKA25852.1Pfam: Bacterial regulatory proteins, tetR family; Pfam: YcdC-like protein, C-terminal region; PRINTS: TetR bacterial regulatory protein HTH signature. (202 aa)
rneRibonuclease E; Endoribonuclease that plays a central role in RNA processing and decay. Required for the maturation of 5S and 16S rRNAs and the majority of tRNAs. Also involved in the degradation of most mRNAs. Belongs to the RNase E/G family. RNase E subfamily. (1077 aa)
AKA25721.1Phosphohydrolase; SMART: Metal dependent phosphohydrolases with conserved 'HD' motif; Pfam: HD domain. (215 aa)
lexA-2LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (202 aa)
AKA25534.1PRINTS: TetR bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory proteins, tetR family. (235 aa)
csrA-2Carbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (64 aa)
AKA25304.1Hypothetical protein; Pfam: Domain of unknown function (DUF4349). (272 aa)
AKA25264.1Iron dicitrate transport regulator FecR; Pfam: FecR protein. (321 aa)
AKA25226.1PRINTS: LacR bacterial regulatory protein HTH signature; Pfam: DeoR-like helix-turn-helix domain; SMART: helix_turn_helix, Deoxyribose operon repressor; Pfam: DeoR C terminal sensor domain. (262 aa)
AKA25141.1Pfam: Metal-sensitive transcriptional repressor. (66 aa)
AKA25139.1PRINTS: Epoxide hydrolase signature; Pfam: Alpha/beta hydrolase family; PRINTS: Alpha/beta hydrolase fold signature. (324 aa)
AKA25115.1TetR family transcriptional regulator; Pfam: YcdC-like protein, C-terminal region; PRINTS: TetR bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory proteins, tetR family. (206 aa)
AKA25010.1Pfam: Bacterial regulatory proteins, luxR family; Pfam: Autoinducer binding domain; SMART: helix_turn_helix, Lux Regulon; PRINTS: LuxR bacterial regulatory protein HTH signature. (241 aa)
AKA24920.1Pfam: Bacterial regulatory proteins, tetR family; Pfam: Bacterial transcriptional repressor. (215 aa)
AKA24895.1Pfam: DeoR C terminal sensor domain; Pfam: DeoR-like helix-turn-helix domain; SMART: helix_turn_helix, Deoxyribose operon repressor. (277 aa)
AKA24756.1Iron dicitrate transporter FecR; Pfam: FecR protein. (299 aa)
AKA24650.1Peptide ABC transporter substrate-binding protein; Pfam: FecR protein. (332 aa)
AKA24603.1Phenylacetic acid degradation protein; Pfam: PaaX-like protein; Pfam: PaaX-like protein C-terminal domain; TIGRFAM: PaaX_trns_reg: phenylacetic acid degradation operon negative regulatory protein PaaX. (297 aa)
ecoEcotin; General inhibitor of family S1 serine proteases. (160 aa)
AKA24463.1Pfam: UTRA domain; Pfam: Bacterial regulatory proteins, gntR family; SMART:; PRINTS: GntR bacterial regulatory protein HTH signature; SMART: helix_turn_helix gluconate operon transcriptional repressor. (245 aa)
AKA24331.1Iron dicitrate transport regulator FecR; Pfam: FecR protein. (323 aa)
AKA24297.1Diguanylate phosphodiesterase; SMART: cheY-homologous receiver domain; SMART: Putative diguanylate phosphodiesterase; Pfam: EAL domain; Pfam: Response regulator receiver domain. (390 aa)
AKA24281.1Pfam: Protease inhibitor Inh; PRINTS: Metalloprotease inhibitor signature. (127 aa)
AKA24250.1Pfam: Bacterial regulatory helix-turn-helix protein, lysR family; PRINTS: LysR bacterial regulatory protein HTH signature; Pfam: LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. (304 aa)
AKA24236.1Hypothetical protein; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Helix-turn-helix domain. (306 aa)
AKA24018.1AraC family transcriptional regulator; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Putative amidotransferase. (311 aa)
AKA23973.1Hypothetical protein; Pfam: Helix-turn-helix domain; SMART: Helix-turn-helix XRE-family like proteins. (121 aa)
AKA23902.1Iron dicitrate transporter FecR; Pfam: FecR protein. (317 aa)
lexALexA family transcriptional regulator; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. (205 aa)
AKA23778.1Pfam: MarR family; PRINTS: Bacterial regulatory protein MarR family signature; SMART: helix_turn_helix multiple antibiotic resistance protein. (157 aa)
AKA23761.1cro/Cl family transcriptional regulator; Pfam: Helix-turn-helix; SMART: Helix-turn-helix XRE-family like proteins; Pfam: Peptidase S24-like. (221 aa)
AKA23753.1Transmembrane anti-sigma factor. (250 aa)
AKA23666.1Peptide ABC transporter substrate-binding protein; Pfam: FecR protein. (327 aa)
AKA23494.1Signal peptide protein; Pfam: EAL domain; Pfam: Response regulator receiver domain; SMART: Putative diguanylate phosphodiesterase. (375 aa)
AKA23427.1PRINTS: TetR bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory proteins, tetR family. (207 aa)
AKA23406.1Hypothetical protein; Pfam: Peptidase S24-like; Belongs to the peptidase S24 family. (142 aa)
AKA23387.1MarR family transcriptional regulator; SMART: helix_turn_helix multiple antibiotic resistance protein; Pfam: MarR family. (153 aa)
AKA23370.1PRINTS: Bacterial regulatory protein MarR family signature; SMART: helix_turn_helix multiple antibiotic resistance protein; Pfam: MarR family. (153 aa)
AKA23245.1MFS transporter; PRINTS: GntR bacterial regulatory protein HTH signature; Pfam: UTRA domain; SMART: helix_turn_helix gluconate operon transcriptional repressor; SMART:; Pfam: Bacterial regulatory proteins, gntR family. (237 aa)
AKA23199.1DNA replication initiation factor; Pfam: Bacterial dnaA protein; TIGRFAM: DnaA_homol_Hda: DnaA regulatory inactivator Hda; Belongs to the DnaA family. HdA subfamily. (234 aa)
AKA23136.1DNA-binding protein; Pfam: Arc-like DNA binding domain. (84 aa)
flgMPfam: Anti-sigma-28 factor, FlgM; TIGRFAM: FlgM_jcvi: flagellar biosynthesis anti-sigma factor FlgM. (105 aa)
csrACarbon storage regulator; A key translational regulator that binds mRNA to regulate translation initiation and/or mRNA stability. Mediates global changes in gene expression, shifting from rapid growth to stress survival by linking envelope stress, the stringent response and the catabolite repression systems. Usually binds in the 5'-UTR; binding at or near the Shine-Dalgarno sequence prevents ribosome-binding, repressing translation, binding elsewhere in the 5'-UTR can activate translation and/or stabilize the mRNA. Its function is antagonized by small RNA(s). (62 aa)
AKA23120.1Pfam: Helix-turn-helix domain; PRINTS: AraC bacterial regulatory protein HTH signature; Pfam: Putative amidotransferase; SMART: helix_turn_helix, arabinose operon control protein. (326 aa)
AKA23097.1PRINTS: TetR bacterial regulatory protein HTH signature; Pfam: AefR-like transcriptional repressor, C-terminal region; Pfam: Bacterial regulatory proteins, tetR family. (202 aa)
AKA23048.1Fe2+-dicitrate sensor, membrane component; Pfam: FecR protein. (318 aa)
AKA23008.1Glycerol-3-phosphate ABC transporter substrate-binding protein; Pfam: FecR protein. (327 aa)
AKA22799.1Pfam: Transcriptional regulator PadR-like family. (188 aa)
iscRTranscriptional regulator; Regulates the transcription of several operons and genes involved in the biogenesis of Fe-S clusters and Fe-S-containing proteins. (150 aa)
AKA22544.1Transcriptional regulator; SMART: helix_turn_helix multiple antibiotic resistance protein; Pfam: MarR family; PRINTS: Bacterial regulatory protein MarR family signature. (189 aa)
dksA-2Molecular chaperone DnaK; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. (146 aa)
AKA22371.1Pfam: ABC transporter; TIGRFAM: ABC_ABC_ChvD: ATP-binding cassette protein, ChvD family; SMART: ATPases associated with a variety of cellular activities. (554 aa)
AKA22329.1IclR family transcriptional regulator; Pfam: IclR helix-turn-helix domain; SMART: helix_turn_helix isocitrate lyase regulation; Pfam: Bacterial transcriptional regulator. (258 aa)
rsfSRibosome-associated protein IOJAP; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation. (135 aa)
AKA22212.1ArsR family transcriptional regulator; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, Arsenical Resistance Operon Repressor. (99 aa)
nrdRNrdR family transcriptional regulator; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. (154 aa)
AKA22123.1PRINTS: CRP bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory proteins, crp family; SMART: Cyclic nucleotide-monophosphate binding domain; SMART: helix_turn_helix, cAMP Regulatory protein; Pfam: Cyclic nucleotide-binding domain. (214 aa)
AKA22007.1Amino acid ABC transporter substrate-binding protein; Pfam: FecR protein. (328 aa)
betIBetI family transcriptional regulator; Repressor involved in choline regulation of the bet genes. (202 aa)
rppHRNA pyrophosphohydrolase; Accelerates the degradation of transcripts by removing pyrophosphate from the 5'-end of triphosphorylated RNA, leading to a more labile monophosphorylated state that can stimulate subsequent ribonuclease cleavage; Belongs to the Nudix hydrolase family. RppH subfamily. (159 aa)
AKA21676.1Pfam: Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ; Belongs to the Rsd/AlgQ family. (161 aa)
AKA21670.1Chemotaxis protein CheY; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; SMART: LytTr DNA-binding domain; Pfam: LytTr DNA-binding domain. (248 aa)
AKA26574.1IclR family transcriptional regulator; Pfam: IclR helix-turn-helix domain; SMART: helix_turn_helix isocitrate lyase regulation; Pfam: Bacterial transcriptional regulator. (263 aa)
pnpPolynucleotide phosphorylase/polyadenylase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. (701 aa)
furPfam: Ferric uptake regulator family; Belongs to the Fur family. (134 aa)
AKA26736.1Ribosome association toxin RatA; Pfam: Polyketide cyclase / dehydrase and lipid transport. (144 aa)
AKA26805.1Pfam: Bacterial regulatory proteins, tetR family; Pfam: YcdC-like protein, C-terminal region; PRINTS: TetR bacterial regulatory protein HTH signature. (220 aa)
AKA26857.1Alpha-2-macroglobulin YfhM; Protects the bacterial cell from host peptidases. (1634 aa)
AKA26925.1Pfam: Bacterial regulatory proteins, tetR family. (210 aa)
AKA27133.1Histidine utilization repressor; PRINTS: GntR bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory proteins, gntR family; Pfam: UTRA domain; SMART: helix_turn_helix gluconate operon transcriptional repressor; SMART:; TIGRFAM: his_ut_repres: histidine utilization repressor. (249 aa)
AKA27346.1Hypothetical protein. (240 aa)
AKA27398.1Peptide ABC transporter substrate-binding protein; Pfam: FecR protein. (318 aa)
fur-2Pfam: Ferric uptake regulator family; Belongs to the Fur family. (144 aa)
AKA27537.1XRE family transcriptional regulator; Pfam: DeoR-like helix-turn-helix domain; Pfam: DeoR C terminal sensor domain; PRINTS: LacR bacterial regulatory protein HTH signature; SMART: helix_turn_helix, Deoxyribose operon repressor. (257 aa)
AKA26552.1Pfam: FecR protein. (321 aa)
AKA26498.1Motility quorum-sensing regulator MqsR. (103 aa)
AKA26465.1SMART:; Pfam: Bacterial regulatory proteins, gntR family; Pfam: UTRA domain; SMART: helix_turn_helix gluconate operon transcriptional repressor; PRINTS: GntR bacterial regulatory protein HTH signature. (243 aa)
AKA26441.1Hisitdine kinase; SMART: Putative diguanylate phosphodiesterase; Pfam: Response regulator receiver domain; SMART: cheY-homologous receiver domain; Pfam: EAL domain. (414 aa)
AKA26394.1Pfam: AefR-like transcriptional repressor, C-terminal region; PRINTS: TetR bacterial regulatory protein HTH signature; Pfam: Bacterial regulatory proteins, tetR family. (214 aa)
Your Current Organism:
Pseudomonas chlororaphis
NCBI taxonomy Id: 587753
Other names: ATCC 9446, Bacillus chlororaphis, CCUG 552 B, CFBP 2132, CIP 63.22, DSM 50083, HAMBI 2011, IFO 3904, JCM 2778, LMG 5004, LMG:5004, NBRC 3904, NCCB 76041, NCIB 9392, NCIMB 9392, NCTC 13002, P. chlororaphis, Pseudomonas sp. UFB2
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