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AKA27484.1 AKA27484.1 AKA23120.1 AKA23120.1 AKA24018.1 AKA24018.1
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
AKA27484.1Pfam: Bacterial regulatory helix-turn-helix protein, lysR family; PRINTS: LysR bacterial regulatory protein HTH signature; Pfam: LysR substrate binding domain; Belongs to the LysR transcriptional regulatory family. (297 aa)
AKA23120.1Pfam: Helix-turn-helix domain; PRINTS: AraC bacterial regulatory protein HTH signature; Pfam: Putative amidotransferase; SMART: helix_turn_helix, arabinose operon control protein. (326 aa)
AKA24018.1AraC family transcriptional regulator; Pfam: Helix-turn-helix domain; SMART: helix_turn_helix, arabinose operon control protein; Pfam: Putative amidotransferase. (311 aa)
Your Current Organism:
Pseudomonas chlororaphis
NCBI taxonomy Id: 587753
Other names: ATCC 9446, Bacillus chlororaphis, CCUG 552 B, CFBP 2132, CIP 63.22, DSM 50083, HAMBI 2011, IFO 3904, JCM 2778, LMG 5004, LMG:5004, NBRC 3904, NCCB 76041, NCIB 9392, NCIMB 9392, NCTC 13002, P. chlororaphis, Pseudomonas sp. UFB2
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