54 items (Providencia stuartii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	crcB	Fluoride ion transporter CrcB; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family. (126 aa)
	eamB_2	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (199 aa)
	APG49727.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (288 aa)
	APG49769.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (59 aa)
	appB	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (336 aa)
	cydA_1	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology. (445 aa)
	ydcR	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (474 aa)
	ves_1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (188 aa)
	leuE_3	Amino acid transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (203 aa)
	APG49867.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (104 aa)
	leuE_2	Leucine efflux protein LeuE; Derived by automated computational analysis using gene prediction method: Protein Homology. (213 aa)
	rhtC_1	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	APG49944.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (71 aa)
	yjiR	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (469 aa)
	marR	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (161 aa)
	APG49958.1	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (292 aa)
	APG50070.1	Proteolipid membrane potential modulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (64 aa)
	APG50071.1	acyl-CoA esterase; Derived by automated computational analysis using gene prediction method: Protein Homology. (138 aa)
	ychJ	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the UPF0225 family. (159 aa)
	leuE_1	Leucine efflux protein LeuE; Derived by automated computational analysis using gene prediction method: Protein Homology. (215 aa)
	APG50604.1	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (152 aa)
	APG50679.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)
	iciA	Transcriptional regulator ArgP; Controls the transcription of genes involved in arginine and lysine metabolism; Belongs to the LysR transcriptional regulatory family. (300 aa)
	APG50682.1	Oxidative stress defense protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (244 aa)
	argO	Arginine transporter; Involved in the export of arginine. Important to control the intracellular level of arginine and the correct balance between arginine and lysine; Belongs to the LysE/ArgO transporter (TC 2.A.75) family. (205 aa)
	mscS	Mechanosensitive ion channel protein MscS; Participates in the regulation of osmotic pressure changes within the cel; Derived by automated computational analysis using gene prediction method: Protein Homology. (291 aa)
	clcA	Chloride channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (466 aa)
	yceI_1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (192 aa)
	yceJ	Derived by automated computational analysis using gene prediction method: Protein Homology. (185 aa)
	rarD_1	Permease; Derived by automated computational analysis using gene prediction method: Protein Homology. (305 aa)
	APG51111.1	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (100 aa)
	APG51113.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (68 aa)
	APG51273.1	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (91 aa)
	APG51438.1	MFS transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (388 aa)
	rhtB	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (205 aa)
	hcpA_7	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (493 aa)
	APG51530.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (195 aa)
	eamB_2-2	Alcohol dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (201 aa)
	rlmJ	23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ; Specifically methylates the adenine in position 2030 of 23S rRNA. (280 aa)
	asnC	Transcriptional regulator AsnC; Derived by automated computational analysis using gene prediction method: Protein Homology. (153 aa)
	mioC_2	FMN-binding protein MioC; An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; Derived by automated computational analysis using gene prediction method: Protein Homology. (146 aa)
	eamA	Acetylserine transporter; Derived by automated computational analysis using gene prediction method: Protein Homology. (302 aa)
	APG52583.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (200 aa)
	rhtC_2	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)
	cydA_2	Cytochrome d terminal oxidase subunit 1; Part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology. (522 aa)
	cydB	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology. (379 aa)
	ybgT	Cyd operon protein YbgT; Derived by automated computational analysis using gene prediction method: Protein Homology. (37 aa)
	APG52964.1	In Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology. (580 aa)
	aarD	Cysteine/glutathione ABC transporter permease/ATP-binding protein CydD; Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system (By similarity); Belongs to the ABC transporter superfamily. (588 aa)
	lrp_3-2	Leucine-responsive transcriptional regulator; Mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; Derived by automated computational analysis using gene prediction method: Protein Homology. (164 aa)
	lrp_2	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (159 aa)
	APG52973.1	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)
	leuE_4	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology. (208 aa)
	APG53079.1	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)

Your Current Organism:

Providencia stuartii

NCBI taxonomy Id: 588
Other names: ATCC 29914, CCUG 14805, CDC 2896-68, CIP 104687, DSM 4539, LMG 3260, LMG:3260, NCTC 11800, P. stuartii, Proteus stuartii

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
APG49944.1	yjiR	BGK56_02855	BGK56_02860	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.547
APG49958.1	marR	BGK56_02925	BGK56_02920	ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.906
APG50070.1	APG50071.1	BGK56_03545	BGK56_03550	Proteolipid membrane potential modulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	acyl-CoA esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
APG50071.1	APG50070.1	BGK56_03550	BGK56_03545	acyl-CoA esterase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Proteolipid membrane potential modulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.415
APG50604.1	leuE_1	BGK56_06455	BGK56_06450	XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	Leucine efflux protein LeuE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.495
APG50682.1	argO	BGK56_06900	BGK56_06905	Oxidative stress defense protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Arginine transporter; Involved in the export of arginine. Important to control the intracellular level of arginine and the correct balance between arginine and lysine; Belongs to the LysE/ArgO transporter (TC 2.A.75) family.	0.561
APG50682.1	mscS	BGK56_06900	BGK56_06910	Oxidative stress defense protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Mechanosensitive ion channel protein MscS; Participates in the regulation of osmotic pressure changes within the cel; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.442
APG51111.1	APG51113.1	BGK56_09230	BGK56_09245	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	0.799
APG51113.1	APG51111.1	BGK56_09245	BGK56_09230	Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.799
APG51530.1	hcpA_7	BGK56_11450	BGK56_11445	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
APG51530.1	rhtB	BGK56_11450	BGK56_11440	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.479
APG52964.1	aarD	BGK56_19305	BGK56_19310	In Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cysteine/glutathione ABC transporter permease/ATP-binding protein CydD; Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system (By similarity); Belongs to the ABC transporter superfamily.	0.998
APG52964.1	appB	BGK56_19305	BGK56_01935	In Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.764
APG52964.1	cydA_1	BGK56_19305	BGK56_01940	In Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome D ubiquinol oxidase subunit I; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.673
APG52964.1	cydA_2	BGK56_19305	BGK56_18580	In Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome d terminal oxidase subunit 1; Part of the aerobic respiratory chain; catalyzes the ubiquinol to ubiquinone; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.798
APG52964.1	cydB	BGK56_19305	BGK56_18585	In Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.	Cytochrome d ubiquinol oxidase subunit II; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.863
APG52973.1	leuE_4	BGK56_19355	BGK56_19360	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lysine transporter LysE; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.664
APG52973.1	lrp_2	BGK56_19355	BGK56_19350	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	AsnC family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.525
APG53079.1	marR	BGK56_19930	BGK56_02920	GNAT family N-acetyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.464
aarD	APG52964.1	BGK56_19310	BGK56_19305	Cysteine/glutathione ABC transporter permease/ATP-binding protein CydD; Somehow involved in the cytochrome D branch of aerobic respiration. Seems to be a component of a transport system (By similarity); Belongs to the ABC transporter superfamily.	In Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.998