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Cpap_0015 Cpap_0015 Cpap_0116 Cpap_0116 Cpap_0205 Cpap_0205 Cpap_0397 Cpap_0397 trmFO trmFO Cpap_0807 Cpap_0807 Cpap_0889 Cpap_0889 Cpap_0890 Cpap_0890 Cpap_0891 Cpap_0891 Cpap_1336 Cpap_1336 Cpap_1675 Cpap_1675 Cpap_2470 Cpap_2470 Cpap_2471 Cpap_2471 Cpap_2472 Cpap_2472 Cpap_2475 Cpap_2475 Cpap_2477 Cpap_2477 Cpap_3405 Cpap_3405 Cpap_3668 Cpap_3668 mltG mltG Cpap_3670 Cpap_3670 Cpap_3671 Cpap_3671 Cpap_3672 Cpap_3672 Cpap_3673 Cpap_3673 Cpap_3674 Cpap_3674 Cpap_3675 Cpap_3675 Cpap_3676 Cpap_3676 cas1 cas1 cas2 cas2
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Cpap_0015Group II intron maturase-specific domain protein; KEGG: nth:Nther_2778 RNA-directed DNA polymerase (reverse transcriptase); manually curated; PFAM: Group II intron maturase-specific domain protein. (148 aa)
Cpap_0116Group II intron maturase-specific domain protein; KEGG: nth:Nther_2778 RNA-directed DNA polymerase (reverse transcriptase); manually curated; PFAM: Group II intron maturase-specific domain protein. (192 aa)
Cpap_0205PFAM: Group II intron maturase-specific domain protein; KEGG: nth:Nther_2778 RNA-directed DNA polymerase (reverse transcriptase). (192 aa)
Cpap_0397Hypothetical protein; Manually curated; KEGG: swo:Swol_1977 hypothetical protein. (101 aa)
trmFOGid protein; Catalyzes the folate-dependent formation of 5-methyl-uridine at position 54 (M-5-U54) in all tRNAs; Belongs to the MnmG family. TrmFO subfamily. (436 aa)
Cpap_0807rRNA (guanine-N(2)-)-methyltransferase; KEGG: cce:Ccel_2429 putative RNA methylase; PFAM: RNA methylase; THUMP domain-containing protein; Belongs to the methyltransferase superfamily. (387 aa)
Cpap_0889PFAM: Protein of unknown function DUF3173; KEGG: bpu:BPUM_0578 hypothetical protein. (67 aa)
Cpap_0890PFAM: integrase family protein; KEGG: bpu:BPUM_0580 integrase; Belongs to the 'phage' integrase family. (413 aa)
Cpap_0891KEGG: smf:Smon_0682 hypothetical protein. (250 aa)
Cpap_1336PFAM: methyltransferase small; KEGG: cce:Ccel_0790 methyltransferase small. (198 aa)
Cpap_1675Hypothetical protein; Manually curated; KEGG: swo:Swol_1977 hypothetical protein. (99 aa)
Cpap_2470PFAM: RelA/SpoT domain protein; KEGG: cce:Ccel_3227 RelA/SpoT domain protein. (230 aa)
Cpap_2471RNA polymerase, sigma-24 subunit, ECF subfamily; Manually curated; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; KEGG: cbe:Cbei_1302 ECF subfamily RNA polymerase sigma-24 factor; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein. (187 aa)
Cpap_2472KEGG: cbe:Cbei_1303 hypothetical protein. (458 aa)
Cpap_2475KEGG: cce:Ccel_3222 hypothetical protein. (281 aa)
Cpap_2477PFAM: aldo/keto reductase; KEGG: cce:Ccel_3220 aldo/keto reductase. (305 aa)
Cpap_3405PFAM: RNA-directed DNA polymerase (Reverse transcriptase); KEGG: spc:Sputcn32_2611 retron-type reverse transcriptase. (348 aa)
Cpap_3668KEGG: cce:Ccel_1471 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain-containing protein. (605 aa)
mltGAminodeoxychorismate lyase; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. (424 aa)
Cpap_3670PFAM: O-methyltransferase family 3; KEGG: cce:Ccel_1473 O-methyltransferase family 3. (238 aa)
Cpap_3671PFAM: peptidase U32; KEGG: cce:Ccel_1474 peptidase U32. (406 aa)
Cpap_3672Metal dependent phosphohydrolase; TIGRFAM: CRISPR-associated HD domain protein; CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase domain protein; metal-dependent phosphohydrolase HD sub domain; KEGG: amt:Amet_1662 CRISPR-associated helicase Cas3; SMART: DEAD-like helicase; metal-dependent phosphohydrolase HD region. (803 aa)
Cpap_3673KEGG: amt:Amet_1663 CRISPR-associated Cas5 family protein; TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein, Cas5. (245 aa)
Cpap_3674KEGG: dae:Dtox_3649 CRISPR-associated protein, Csd1 family; TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133. (646 aa)
Cpap_3675KEGG: amt:Amet_1665 CRISPR-associated Csd2 family protein; TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801. (285 aa)
Cpap_3676CRISPR-associated protein Cas4; CRISPR (clustered regularly interspaced short palindromic repeat) is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Belongs to the CRISPR-associated exonuclease Cas4 family. (226 aa)
cas1CRISPR-associated protein Cas1; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain spacers, sequences complementary to antecedent mobile elements, and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Acts as a dsDNA endonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (343 aa)
cas2CRISPR-associated protein Cas2; CRISPR (clustered regularly interspaced short palindromic repeat), is an adaptive immune system that provides protection against mobile genetic elements (viruses, transposable elements and conjugative plasmids). CRISPR clusters contain sequences complementary to antecedent mobile elements and target invading nucleic acids. CRISPR clusters are transcribed and processed into CRISPR RNA (crRNA). Functions as a ssRNA-specific endoribonuclease. Involved in the integration of spacer DNA into the CRISPR cassette. (96 aa)
Your Current Organism:
Ruminiclostridium papyrosolvens DSM 2782
NCBI taxonomy Id: 588581
Other names: Clostridium papyrosolvens DSM 2782, R. papyrosolvens DSM 2782
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