(14 nodes) Mixed, incl. Ribosomal protein L20, and Organellar ribosome network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0BCH6_PARTE	Uncharacterized protein. (215 aa)
	A0BD97_PARTE	Uncharacterized protein. (423 aa)
	A0BST7_PARTE	Uncharacterized protein. (700 aa)
	A0CDN7_PARTE	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family. (168 aa)
	A0CF63_PARTE	Elp3 domain-containing protein. (375 aa)
	A0CFW1_PARTE	Uncharacterized protein. (191 aa)
	A0CSQ3_PARTE	RRF domain-containing protein. (233 aa)
	A0D2L4_PARTE	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family. (78 aa)
	A0D2P9_PARTE	Uncharacterized protein. (289 aa)
	A0DC27_PARTE	RF_PROK_I domain-containing protein. (147 aa)
	A0DFC3_PARTE	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family. (168 aa)
	A0DYU1_PARTE	Uncharacterized protein. (224 aa)
	A0E2K7_PARTE	Uncharacterized protein. (60 aa)
	PTMB.365c	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family. (213 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BCH6_PARTE	A0BD97_PARTE	A0BCH6	A0BD97	Uncharacterized protein.	Uncharacterized protein.	0.999
A0BCH6_PARTE	A0BST7_PARTE	A0BCH6	A0BST7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0BCH6_PARTE	A0CDN7_PARTE	A0BCH6	A0CDN7	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	0.998
A0BCH6_PARTE	A0CF63_PARTE	A0BCH6	A0CF63	Uncharacterized protein.	Elp3 domain-containing protein.	0.998
A0BCH6_PARTE	A0CFW1_PARTE	A0BCH6	A0CFW1	Uncharacterized protein.	Uncharacterized protein.	0.998
A0BCH6_PARTE	A0CSQ3_PARTE	A0BCH6	A0CSQ3	Uncharacterized protein.	RRF domain-containing protein.	0.997
A0BCH6_PARTE	A0D2L4_PARTE	A0BCH6	A0D2L4	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.998
A0BCH6_PARTE	A0D2P9_PARTE	A0BCH6	A0D2P9	Uncharacterized protein.	Uncharacterized protein.	0.998
A0BCH6_PARTE	A0DC27_PARTE	A0BCH6	A0DC27	Uncharacterized protein.	RF_PROK_I domain-containing protein.	0.998
A0BCH6_PARTE	A0DFC3_PARTE	A0BCH6	A0DFC3	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	0.998
A0BCH6_PARTE	A0DYU1_PARTE	A0BCH6	A0DYU1	Uncharacterized protein.	Uncharacterized protein.	0.998
A0BCH6_PARTE	A0E2K7_PARTE	A0BCH6	A0E2K7	Uncharacterized protein.	Uncharacterized protein.	0.998
A0BCH6_PARTE	PTMB.365c	A0BCH6	Q6BFK8	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uS15 family.	0.996
A0BD97_PARTE	A0BCH6_PARTE	A0BD97	A0BCH6	Uncharacterized protein.	Uncharacterized protein.	0.999
A0BD97_PARTE	A0BST7_PARTE	A0BD97	A0BST7	Uncharacterized protein.	Uncharacterized protein.	0.999
A0BD97_PARTE	A0CDN7_PARTE	A0BD97	A0CDN7	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL20 family.	0.999
A0BD97_PARTE	A0CF63_PARTE	A0BD97	A0CF63	Uncharacterized protein.	Elp3 domain-containing protein.	0.999
A0BD97_PARTE	A0CFW1_PARTE	A0BD97	A0CFW1	Uncharacterized protein.	Uncharacterized protein.	0.999
A0BD97_PARTE	A0CSQ3_PARTE	A0BD97	A0CSQ3	Uncharacterized protein.	RRF domain-containing protein.	0.998
A0BD97_PARTE	A0D2L4_PARTE	A0BD97	A0D2L4	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999