(6 nodes) Mixed, incl. Nuclear protein Es2, and Rtf2 RING-finger network (Paramecium tetraurelia)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:
	A0BYX4_PARTE	Uncharacterized protein. (342 aa)
	A0C1J1_PARTE	Uncharacterized protein. (239 aa)
	A0CJK7_PARTE	Uncharacterized protein. (171 aa)
	A0DAA5_PARTE	Uncharacterized protein. (449 aa)
	A0DTQ1_PARTE	Rtf2 domain-containing protein. (259 aa)
	A0E718_PARTE	Uncharacterized protein. (346 aa)

Your Current Organism:

Paramecium tetraurelia

NCBI taxonomy Id: 5888
Other names: P. tetraurelia, Paramecium aurelia syngen 4

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0BYX4_PARTE	A0C1J1_PARTE	A0BYX4	A0C1J1	Uncharacterized protein.	Uncharacterized protein.	0.557
A0BYX4_PARTE	A0CJK7_PARTE	A0BYX4	A0CJK7	Uncharacterized protein.	Uncharacterized protein.	0.838
A0BYX4_PARTE	A0DAA5_PARTE	A0BYX4	A0DAA5	Uncharacterized protein.	Uncharacterized protein.	0.530
A0BYX4_PARTE	A0DTQ1_PARTE	A0BYX4	A0DTQ1	Uncharacterized protein.	Rtf2 domain-containing protein.	0.436
A0C1J1_PARTE	A0BYX4_PARTE	A0C1J1	A0BYX4	Uncharacterized protein.	Uncharacterized protein.	0.557
A0C1J1_PARTE	A0DAA5_PARTE	A0C1J1	A0DAA5	Uncharacterized protein.	Uncharacterized protein.	0.902
A0C1J1_PARTE	A0DTQ1_PARTE	A0C1J1	A0DTQ1	Uncharacterized protein.	Rtf2 domain-containing protein.	0.584
A0C1J1_PARTE	A0E718_PARTE	A0C1J1	A0E718	Uncharacterized protein.	Uncharacterized protein.	0.557
A0CJK7_PARTE	A0BYX4_PARTE	A0CJK7	A0BYX4	Uncharacterized protein.	Uncharacterized protein.	0.838
A0CJK7_PARTE	A0E718_PARTE	A0CJK7	A0E718	Uncharacterized protein.	Uncharacterized protein.	0.838
A0DAA5_PARTE	A0BYX4_PARTE	A0DAA5	A0BYX4	Uncharacterized protein.	Uncharacterized protein.	0.530
A0DAA5_PARTE	A0C1J1_PARTE	A0DAA5	A0C1J1	Uncharacterized protein.	Uncharacterized protein.	0.902
A0DAA5_PARTE	A0E718_PARTE	A0DAA5	A0E718	Uncharacterized protein.	Uncharacterized protein.	0.530
A0DTQ1_PARTE	A0BYX4_PARTE	A0DTQ1	A0BYX4	Rtf2 domain-containing protein.	Uncharacterized protein.	0.436
A0DTQ1_PARTE	A0C1J1_PARTE	A0DTQ1	A0C1J1	Rtf2 domain-containing protein.	Uncharacterized protein.	0.584
A0DTQ1_PARTE	A0E718_PARTE	A0DTQ1	A0E718	Rtf2 domain-containing protein.	Uncharacterized protein.	0.436
A0E718_PARTE	A0C1J1_PARTE	A0E718	A0C1J1	Uncharacterized protein.	Uncharacterized protein.	0.557
A0E718_PARTE	A0CJK7_PARTE	A0E718	A0CJK7	Uncharacterized protein.	Uncharacterized protein.	0.838
A0E718_PARTE	A0DAA5_PARTE	A0E718	A0DAA5	Uncharacterized protein.	Uncharacterized protein.	0.530
A0E718_PARTE	A0DTQ1_PARTE	A0E718	A0DTQ1	Uncharacterized protein.	Rtf2 domain-containing protein.	0.436